MirGeneDB 3.0
MirGeneDB ID

Cbr-Bantam-P4

Family name BANTAM (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-82
Paralogues Cbr-Bantam-P1a  Cbr-Bantam-P1b  Cbr-Bantam-P2  Cbr-Bantam-P3 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cel-Bantam-P4  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(CB4)		 X: 4356782-4356845 [+] Ensembl
Clustered miRNAs
(< 50kb from Bantam-P4)		 Bantam-P4 X: 4356782-4356845 [+] Ensembl
Bantam-P3 X: 4359703-4359767 [-] Ensembl
Seed GAGAUCA
Precursor
(pre-Mir +30nt flank)		 
AUUAAAACUAUAAAAAGUUCUUCUAGCGACAGGUUUUCGCCGUGAUCUGCAGAGUUCCAUGAAGAAAACAUCUGAGAUCAUCGUGAAAGCCAGUUGCUUAAGAGGACUCAUUGUGAAAAACUAG
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Structure
        10        20          30        40        50        60  
AUUAAAACUAUAAAAAGU      --|     A         C       G    GUUCCAUG 
                  UCUUCU  AGCGAC GGUUUUCGC GUGAUCU CAGA        \
                  AGGAGA  UCGUUG CCGAAAGUG UACUAGA GUCU        A
GAUCAAAAAGUGUUACUC      AU^     A         C       -    ACAAAAGA 
  120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Bantam-P4_5p*
mirBase accessionNone
Sequence 
0- AGGUUUUCGCCGUGAUCUGCAGA -23
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Mature sequence

Cbr-Bantam-P4_3p
mirBase accessionMIMAT0000489
Sequence 
42- UGAGAUCAUCGUGAAAGCCAGU -64
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