Mir-73-P2a

MirGeneDB ID

Cbr-Mir-73-P2a

Family name

MIR-73 (all species)

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-74b

Paralogues

Cbr-Mir-73-P1a Cbr-Mir-73-P1b Cbr-Mir-73-P2b Cbr-Mir-73-P3a Cbr-Mir-73-P3b

Orthologues

Cel-Mir-73-P2

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Caenorhabditis

Genome context
(CB4)

X: 4426739-4426799 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-73-P2a)

Mir-9-P14 X: 4419753-4419815 [-] Ensembl
Mir-785-P2 X: 4421255-4421318 [+] Ensembl
Mir-73-P2b X: 4426608-4426674 [-] Ensembl
Mir-73-P2a X: 4426739-4426799 [-] Ensembl
Mir-73-P1a X: 4426903-4426964 [-] Ensembl
Mir-2231 X: 4430575-4430638 [-] Ensembl

Seed

GGACUUC

Precursor
(pre-Mir +30nt flank)

CUGCUACUAUUCAAGCCCCUGCCACACUUUUGGACUUCCUUCUCGUUCCCAGCAAAAUGCACAGUUUGCUGGCAAGACUAGGCAGUCCAGAUGUGUGGCAGCGGCAGUUUUUGGUGAGUUU

Get precursor sequence

Structure

        10          20        30        40        50        60
CUGCUACUAUUCAAGCC- -|        U        U   UC  GUUC     AAAAUG 
                  C CUGCCACAC UUUGGACU CCU  UC    CCAGC      C
                  G GACGGUGUG AGACCUGA GGA  AG    GGUCG      A
UUUGAGUGGUUUUUGACG C^        U        C   UC  AAC-     UUUGAC 
 .       110       100        90        80         70