MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-254

Family name MIR-254 (all species)
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-254
Paralogues
Orthologues Cbr-Mir-254 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(ce11)		 chrX: 11333550-11333612 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-254)		 Mir-787 chrX: 11294724-11294783 [+] UCSC Ensembl
Mir-254 chrX: 11333550-11333612 [-] UCSC Ensembl
Seed GCAAAUC
Precursor
(pre-Mir +30nt flank)		 
UGCUGAGCACGGACUAUGCAUAUUGCCGCCUACAGAAGCAUAGAUUUCCACAAACCAUUCGAGGUGUUUGUGCAAAUCUUUCGCGACUGUAGGCGGCGAACAUGCAGUUUUUUCGCACUUGGU
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Structure
        10         20         30        40         50        60
UGCUGAGCACGGACUAU-    A-             AA  AU-|     C    AACCAUU 
                  GCAU  UUGCCGCCUACAG  GC   AGAUUU CACA       C
                  CGUA  AGCGGCGGAUGUC  CG   UCUAAA GUGU       G
UGGUUCACGCUUUUUUGA    CA             AG  CUU^     C    UUGUGGA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-254_5p*
mirBase accessionMIMAT0031891
Sequence 
0- UACAGAAGCAUAGAUUUCCACA -22
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Mature sequence

Cel-Mir-254_3p
mirBase accessionMIMAT0000310
Sequence 
40- UGCAAAUCUUUCGCGACUGUAGG -63
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Proposed targets microrna.org: MIMAT0000310
TargetScanWorm: cel-miR-254