MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-64-P3

Family name MIR-64 (all species)
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-66
Paralogues Cel-Mir-64-P1  Cel-Mir-64-P2 
Orthologues Cbr-Mir-64-o3 
Node of Origin (locus) C. elegans
Node of Origin (family) Caenorhabditis
Genome context
(ce11)		 chrIII: 2173124-2173188 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-64-P3)		 Mir-229 chrIII: 2172459-2172561 [+] UCSC Ensembl
Mir-64-P1 chrIII: 2172869-2172936 [+] UCSC Ensembl
Mir-64-P2 chrIII: 2173019-2173080 [+] UCSC Ensembl
Mir-64-P3 chrIII: 2173124-2173188 [+] UCSC Ensembl
Seed AUGACAC
Precursor
(pre-Mir +30nt flank)		 
CCAUUAAAAAACGGCCACAAAAAUGCCAUACAUGACACUGAUUAGGGAUGUGAUGAAUGUUAAGAUCCCGAUCAAAUUCCUAACGGUGUCAAACAUGGCGUAUGUGGUUGUAGUUGGUGAGCUUU
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Structure
        10          20        30        40        50        60  
CCAUUAAAAAACGGCCA--| AAA       ACA        A        G   UGAAUGUU 
                   CA   AUGCCAU   UGACACUG UUAGGGAU UGA        A
                   GU   UGCGGUA   ACUGUGGC AAUCCUUA ACU        A
UUUCGAGUGGUUGAUGUUG^ GUA       CAA        -        A   AGCCCUAG 
   120       110       100        90         80        70
Deep sequencing
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CommentThere is a second Dicer cut +2 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
- +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-64-P3_5p
mirBase accessionMIMAT0000038
Sequence 
0- CAUGACACUGAUUAGGGAUGUGA -23
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Proposed targets microrna.org: MIMAT0000038
TargetScanWorm: cel-miR-66
Star sequence

Cel-Mir-64-P3_3p*
mirBase accessionMIMAT0020315
Sequence 
43- AAAUUCCUAACGGUGUCAAACA -65
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