Mir-430-P3

MirGeneDB ID

Cfa-Mir-430-P3

Family name

MIR-430 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-302a

Paralogues

Cfa-Mir-430-P1 Cfa-Mir-430-P2 Cfa-Mir-430-P4 Cfa-Mir-430-P5d1 Cfa-Mir-430-P5d2 Cfa-Mir-430-P7d1 Cfa-Mir-430-P7d2

Orthologues

Aca-Mir-430-P3 Ami-Mir-430-P3 Bta-Mir-430-P3 Cja-Mir-430-P3 Cli-Mir-430-P3 Cmi-Mir-430-P3 Cpi-Mir-430-P3 Cpo-Mir-430-P3 Dno-Mir-430-P3 Dre-Mir-430-o3a1 Dre-Mir-430-o3a2 Dre-Mir-430-o3a3 Dre-Mir-430-o3a4 Dre-Mir-430-o3a5 Dre-Mir-430-o3a6 Dre-Mir-430-o3a7 Dre-Mir-430-o3a8 Dre-Mir-430-o3a9 Dre-Mir-430-o3a10 Dre-Mir-430-o3a11 Dre-Mir-430-o3a12 Dre-Mir-430-o3a13 Dre-Mir-430-o3a14 Dre-Mir-430-o3a15 Dre-Mir-430-o3a16 Dre-Mir-430-o3b1 Dre-Mir-430-o3b2 Eca-Mir-430-P3 Ete-Mir-430-P3 Gga-Mir-430-P3 Gja-Mir-430-P3 Hsa-Mir-430-P3 Laf-Mir-430-P3 Mdo-Mir-430-P3 Mml-Mir-430-P3 Mmr-Mir-430-P3 Mmu-Mir-430-P3 Neu-Mir-430-P3 Oan-Mir-430-P3 Ocu-Mir-430-P3 Pab-Mir-430-P3 Rno-Mir-430-P3 Sha-Mir-430-P3 Spt-Mir-430-P3 Sto-Mir-430-P3 Tgu-Mir-430-P3 Xla-Mir-430-P3a Xla-Mir-430-P3b Xtr-Mir-430-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr32: 32429212-32429272 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P3)

Mir-92-P2a chr32: 32428908-32428967 [-] UCSC Ensembl
Mir-430-P4 chr32: 32429036-32429096 [-] UCSC Ensembl
Mir-430-P3 chr32: 32429212-32429272 [-] UCSC Ensembl
Mir-430-P2 chr32: 32429369-32429428 [-] UCSC Ensembl
Mir-430-P1 chr32: 32429504-32429565 [-] UCSC Ensembl

Seed

AAGUGCU

Precursor
(pre-Mir +30nt flank)

UUACGUUUUUCCAAGACUGGGCUCCCCACCACUUAAACGUGGAUGUACUUGCUUUGAAACUCAAAAAGUAAGUGCUUCCAUGUUUUAGUGAUGGUAAGUCUUACUUUUACAUUUUAGAAGU

Get precursor sequence

Structure

        10          20        30        40        50          
UUACGUUUUUCCAAGACU--|    CC   C    U         U         UUGAAA 
                    GGGCU  CCA CACU AAACGUGGA GUACUUGCU      \
                    UCUGA  GGU GUGA UUUGUACCU CGUGAAUGA      C
UGAAGAUUUUACAUUUUCAU^    AU   A    U         U         AAAACU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut possibly at +3 on the 5p arm but without accompaning 3p reads.

3' NTU

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-430-P3_5p* (predicted)

mirBase accession

MIMAT0009855

Sequence

0- ACUUAAACGUGGAUGUACUUGCU -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-302a
miRDB: MIMAT0009855

Mature sequence

Cfa-Mir-430-P3_3p

mirBase accession

None

Sequence

38- UAAGUGCUUCCAUGUUUUAGUGA -61

Get sequence