MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4017-P1

Family name MIR-4017 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4033
Paralogues Cin-Mir-4017-P2a  Cin-Mir-4017-P2b 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT000042.1: 67380-67435 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4017-P1)		 Mir-4017-P1 HT000042.1: 67380-67435 [+] UCSC Ensembl
Mir-4017-P2a HT000042.1: 68643-68699 [+] UCSC Ensembl
Mir-4017-P2b HT000042.1: 68643-68699 [+] UCSC Ensembl
Seed AAGUGCA
Precursor
(pre-Mir +30nt flank)		 
GUGAUACAAAAAUCAUGUUGUUACAAUACUGGAGCACAAUAUGUAGUUUAUGUGGCUUAUUUUCAUAAGUGCAUUGCGUGCUCCAGUUUUGGUCAAUUCUGGCAGCGAUUUGAAAU
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Structure
        10           20        30        40        50        
GUGAUACAAAAAUCAUG---|  UUA   U          AAU     G      UGGCU 
                    UUG   CAA ACUGGAGCAC   AUGUA UUUAUG     \
                    AAC   GUU UGACCUCGUG   UACGU GAAUAC     U
UAAAGUUUAGCGACGGUCUU^  UG-   U          CGU     -      UUUUA 
    110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4017-P1_5p*
mirBase accessionMIMAT0016555
Sequence 
0- GGAGCACAAUAUGUAGUUUAUG -22
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Mature sequence

Cin-Mir-4017-P1_3p
mirBase accessionMIMAT0016556
Sequence 
35- UAAGUGCAUUGCGUGCUCCAG -56
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