MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4017-P2a

Family name MIR-4017 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4017-1
Paralogues Cin-Mir-4017-P1  Cin-Mir-4017-P2b 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT000042.1: 68643-68699 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4017-P2a)		 Mir-4017-P1 HT000042.1: 67380-67435 [+] UCSC Ensembl
Mir-4017-P2a HT000042.1: 68643-68699 [+] UCSC Ensembl
Mir-4017-P2b HT000042.1: 68643-68699 [+] UCSC Ensembl
Seed AAGUGCA
Precursor
(pre-Mir +30nt flank)		 
UUAGUCAGUAAAAUUAGUGCAUAGCGUUAAUGUGCUGUAUAUGCACUUCUAUGUAUUUAAUUUUAUAAGUGCAUGUAUGGUGCUAUUGACUCUGCACAACUAACUUCAAAUAAAACA
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Structure
        10            20        30         40        50       
UUAGUCAGUAAAAUUAG----|   UA C      - UG              C  UGUAU 
                     UGCA  G GUUAAU G  CUGUAUAUGCACUU UA     U
                     ACGU  C CAGUUA C  GGUAUGUACGUGAA AU     U
ACAAAAUAAACUUCAAUCAAC^   -- U      U GU              U  UUUAA 
     110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4017-P2a_5p*
mirBase accessionMIMAT0016524
Sequence 
0- UGUGCUGUAUAUGCACUUCUA -21
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Mature sequence

Cin-Mir-4017-P2a_3p
mirBase accessionMIMAT0016525
Sequence 
35- UAAGUGCAUGUAUGGUGCUAUU -57
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