MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-1298

Family name MIR-1298 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1298  Cfa-Mir-1298  Cpo-Mir-1298  Eca-Mir-1298  Ete-Mir-1298  Hsa-Mir-1298  Laf-Mir-1298  Mml-Mir-1298  Mmr-Mir-1298  Mmu-Mir-1298  Ocu-Mir-1298  Pab-Mir-1298  Rno-Mir-1298 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 107017742-107017817 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1298)		 Mir-1298 CM021937.1: 107017742-107017817 [+] UCSC Ensembl
Mir-1911 CM021937.1: 107045408-107045466 [+] UCSC Ensembl
Seed UCAUUCA
Precursor
(pre-Mir +30nt flank)		 
AGAGCUGUUGGAGAGAUGAAAAGUUAAGGGUUCAUUCAGCUGUCCAGAUGUAUCCAAGUACCUUGUGUAAUUUGGCAAUAAAUACAUCUGGGCAACUGACUGAACUUUUCGCUUUUCACGACUCAGCUGGAACCCU
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Structure
        10          20        30        40        50        60       
AGAGCUGUUGGAGAGAU--|      U         U    C            UCCAAGUACCUUGU 
                   GAAAAGU AAGGGUUCA UCAG UGUCCAGAUGUA              G
                   CUUUUCG UUUUCAAGU AGUC ACGGGUCUACAU              U
UCCCAAGGUCGACUCAGCA^      C         C    A            AAAUAACGGUUUAA 
    130       120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-1298_5p (predicted)
mirBase accessionNone
Sequence 
0- UUCAUUCAGCUGUCCAGAUGUA -22
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Star sequence

Cja-Mir-1298_3p* (predicted)
mirBase accessionNone
Sequence 
54- CAUCUGGGCAACUGACUGAACU -76
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