MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-1298

Family name MIR-1298 (all species)
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-1298
Paralogues
Orthologues Bta-Mir-1298  Cfa-Mir-1298  Cja-Mir-1298  Cpo-Mir-1298  Eca-Mir-1298  Ete-Mir-1298  Hsa-Mir-1298  Laf-Mir-1298  Mml-Mir-1298  Mmr-Mir-1298  Mmu-Mir-1298  Pab-Mir-1298  Rno-Mir-1298 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrX: 63168656-63168729 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1298)		 Mir-1298 chrX: 63168656-63168729 [+] UCSC Ensembl
Mir-1911 chrX: 63203067-63203125 [+] UCSC Ensembl
Seed UCAUUCG
Precursor
(pre-Mir +30nt flank)		 
AGAGUUGUUGGACAAAUGAGGAGUUAAGAGUUCAUUCGGCUGUCCAGAUGUAUCCAAGUACCCAGUUAUUUGGCAAUAAAUACAUCUGGGCAACUGAUUGAACUUUUCGCUUUUCAUGACUCAACUGGAACUCU
Get precursor sequence
Structure
        10          20        30        40        50        60      
AGAGUUGUUGGACAAAU--|      U         U    C            UCCAAGUACCCAG 
                   GAGGAGU AAGAGUUCA UCGG UGUCCAGAUGUA             U
                   CUUUUCG UUUUCAAGU AGUC ACGGGUCUACAU             U
UCUCAAGGUCAACUCAGUA^      C         U    A            AAAUAACGGUUUA 
  130       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
He Ki Te To Wh
Mature sequence

Ocu-Mir-1298_5p
mirBase accessionMIMAT0048595
Sequence 
0- UUCAUUCGGCUGUCCAGAUGUA -22
Get sequence
Star sequence

Ocu-Mir-1298_3p*
mirBase accessionMIMAT0048596
Sequence 
52- CAUCUGGGCAACUGAUUGAACU -74
Get sequence