MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-642

Family name MIR-642 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-642  Mml-Mir-642  Pab-Mir-642 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021936.1: 38414724-38414780 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-642)		 Mir-330-v1 CM021936.1: 38389745-38389808 [-] UCSC Ensembl
Mir-330-v2 CM021936.1: 38389745-38389808 [-] UCSC Ensembl
Mir-642 CM021936.1: 38414724-38414780 [-] UCSC Ensembl
Seed UCUCUCU
Precursor
(pre-Mir +30nt flank)		 
UUCAAUGAUGAUGGAGGCUGAGUUGGGAGGGUCUCUCUCCAGAUAUGUCUUGGGGGGAGGGAUCAAGACACAUGUCGAGAGGGAUCCUCCCAACUCUGAUAAACUGUUGAGAGUGUA
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Structure
        10          20        30        40          50        
UUCAAUGAUGAUGGAGGCU--|                   CA    --       GGGGG 
                     GAGUUGGGAGGGUCUCUCUC  GAUA  UGUCUUG     \
                     CUCAACCCUCCUAGGGAGAG  CUGU  ACAGAAC     A
AUGUGAGAGUUGUCAAAUAGU^                   --    AC       UAGGG 
     110       100        90        80          70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Mature sequence

Cja-Mir-642_5p (predicted)
mirBase accessionNone
Sequence 
0- GUCUCUCUCCAGAUAUGUCUUG -22
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Star sequence

Cja-Mir-642_3p* (predicted)
mirBase accessionNone
Sequence 
35- AGACACAUGUCGAGAGGGAUCC -57
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