MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-642

Family name MIR-642 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Cja-Mir-642  Hsa-Mir-642  Mml-Mir-642 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054699.2: 51724488-51724544 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-642)		 Mir-330-v1 CM054699.2: 51692394-51692457 [-] UCSC Ensembl
Mir-330-v2 CM054699.2: 51692394-51692457 [-] UCSC Ensembl
Mir-642 CM054699.2: 51724488-51724544 [+] UCSC Ensembl
Seed UCCCUCU
Precursor
(pre-Mir +30nt flank)		 
CACUCUCCACAGUUUAUCUGAGUUGGGAGGGUCCCUCUCCAAAUGUGUCUUGGGGUGGGGGAUCAAGACACAUUUGGAGAGGGAACCUCCCAGCUCGGCCUCUGCCAUCAUUGAACU
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Structure
        10          20        30        40        50        
CACUCUCCACAGUUUAU--|            G                     GGGUG 
                   CUGAGUUGGGAGG UCCCUCUCCAAAUGUGUCUUG     \
                   GGCUCGACCCUCC AGGGAGAGGUUUACACAGAAC     G
UCAAGUUACUACCGUCUCC^            A                     UAGGG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
Br Br Li Li
Mature sequence

Pab-Mir-642_5p (predicted)
mirBase accessionNone
Sequence 
0- GUCCCUCUCCAAAUGUGUCUUG -22
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Star sequence

Pab-Mir-642_3p* (predicted)
mirBase accessionNone
Sequence 
35- AGACACAUUUGGAGAGGGAACC -57
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