| MirGeneDB ID | Cpo-Mir-574 |
|---|
| Family name |
MIR-574 (all species) |
|---|
| Species |
Guinea pig (Cavia porcellus) |
|---|
| MiRBase ID |
cpo-mir-574
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-574
Cfa-Mir-574
Cja-Mir-574
Dno-Mir-574
Eca-Mir-574
Ete-Mir-574
Hsa-Mir-574
Laf-Mir-574
Mml-Mir-574
Mmr-Mir-574
Mmu-Mir-574
Ocu-Mir-574
Pab-Mir-574
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_24: 13318154-13318210 [+]
UCSC
|
|---|
| Seed |
ACGCUCA |
|---|
Precursor
(pre-Mir +30nt flank) |
GGCCGAGGGUCCUGCGUGGGUGCGGGCGUGUGAGUGUGUGUGUGUGAGUGUGUGUCGCUCCAGUCCACGCUCAUGCACACACCCACACGCCCGCACGCCGGGUCUGCCCCCUCGGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGCCGAGGGUCCUGCGU- -| AGU UGUCGC
GG GUGCGGGCGUGUG GUGUGUGUGUGAGUGUG \
CC CACGCCCGCACAC CACACACGUACUCGCAC U
CCGGCUCCCCCGUCUGGG G^ C-- CUGACC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cpo-Mir-574_5p* |
| mirBase accession | MIMAT0047349 |
|---|
| Sequence |
0- UGAGUGUGUGUGUGUGAGUGUGUG -24
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-574_3p |
| mirBase accession | MIMAT0047350 |
|---|
| Sequence |
35- CACGCUCAUGCACACACCCACA -57
Get sequence
|
|---|
