Mir-306

MirGeneDB ID

Dmo-Mir-306

Family name

MIR-306 (all species)

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-306

Paralogues

Orthologues

Aae-Mir-306 Aga-Mir-306 Bge-Mir-306 Dan-Mir-306 Dlo-Mir-306 Dme-Mir-306 Dsi-Mir-306 Dya-Mir-306 Gpa-Mir-306 Hme-Mir-306

Node of Origin (locus)

Neoptera

Node of Origin (family)

Neoptera

Genome context
(Dmoj_caf1)

scaffold_6500: 7201959-7202025 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-306)

Mir-9-P11 scaffold_6500: 7201357-7201423 [+] Ensembl
Mir-306 scaffold_6500: 7201959-7202025 [+] Ensembl
Mir-9-P12-v1 scaffold_6500: 7202147-7202208 [+] Ensembl
Mir-9-P12-v2 scaffold_6500: 7202147-7202208 [+] Ensembl
Mir-9-P13 scaffold_6500: 7202321-7202381 [+] Ensembl

Seed

CAGGUAC

Precursor
(pre-Mir +30nt flank)

CGAUUCAUGAUGUCCAGCACACGCUGCAGCUCAGGUACUUAGUGACUCUCAAUCACAUAUUGCUUUGCAUACUUUGAGGGUCGCUCUGUGCCUGUGCCGCCCGUGUUGCACACAGCCACACAAUUGU

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Structure

        10           20        30        40        50        60   
CGAUUCAUGAUGUCCAGC---|    CU  A  U       UU            UCACAUAUUG 
                     ACACG  GC GC CAGGUAC  AGUGACUCUCAA          \
                     UGUGC  CG CG GUCCGUG  UCGCUGGGAGUU          C
UGUUAACACACCGACACACGU^    C-  C  U       UC            UCAUACGUUU 
     120       110        100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	Fe	Ma	Ma

Mature sequence

Dmo-Mir-306_5p

mirBase accession

MIMAT0008648

Sequence

0- UCAGGUACUUAGUGACUCUCAA -22

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Star sequence

Dmo-Mir-306_3p*

mirBase accession

MIMAT0008649

Sequence

45- GAGGGUCGCUCUGUGCCUGUGC -67

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