Mir-972

MirGeneDB ID

Dsi-Mir-972

Family name

MIR-972 (all species)

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-972

Paralogues

Orthologues

Dme-Mir-972

Node of Origin (locus)

D. melanogaster + D. simulans

Node of Origin (family)

D. melanogaster + D. simulans

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

X: 18322964-18323019 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-972)

Mir-972 X: 18322964-18323019 [+] UCSC Ensembl
Mir-9369 X: 18323144-18323204 [+] UCSC Ensembl
Mir-973 X: 18323323-18323387 [+] UCSC Ensembl
Mir-974 X: 18323461-18323522 [+] UCSC Ensembl
Mir-975 X: 18330806-18330866 [+] UCSC Ensembl
Mir-976 X: 18330933-18330991 [+] UCSC Ensembl
Mir-977 X: 18331071-18331133 [+] UCSC Ensembl
Mir-978-v1 X: 18333231-18333293 [+] UCSC Ensembl
Mir-978-v2 X: 18333232-18333292 [+] UCSC Ensembl

Seed

GUACAAU

Precursor
(pre-Mir +30nt flank)

AAAAAGCUGAAGAGAAUGAUAGUGAAUUGCUAAAUAUUUUCUUUGUAUAAAUGACUUUUAACAUUUGUACAAUAUUAAUAUUUAAACAUUUCUCGAAUCAAAGUAUGCCACAUCAG

Get precursor sequence

Structure

        10        20         30         40        50       
AAAAAGCUGAAGAGAAUGAUAGU-   U  C-|       UUCU         UGACU 
                        GAA UG  UAAAUAUU    UUGUAUAAA     U
                        CUU AC  AUUUAUAA    AACAUGUUU     U
GACUACACCGUAUGAAACUAAGCU   U  AA^       UUAU         ACAAU 
    110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

He	Wh

Star sequence

Dsi-Mir-972_5p*

mirBase accession

MIMAT0039111

Sequence

0- UAAAUAUUUUCUUUGUAUAAA -21

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Mature sequence

Dsi-Mir-972_3p

mirBase accession

MIMAT0039112

Sequence

35- UGUACAAUAUUAAUAUUUAAA -56

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