MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-181-P1b

Family name MIR-181 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-181a
Paralogues Eca-Mir-181-P1a  Eca-Mir-181-P1c  Eca-Mir-181-P2a  Eca-Mir-181-P2b  Eca-Mir-181-P2c 
Orthologues Aca-Mir-181-P1b  Ami-Mir-181-P1b  Bta-Mir-181-P1b  Cfa-Mir-181-P1b  Cja-Mir-181-P1b  Cli-Mir-181-P1b  Cmi-Mir-181-P1b  Cpi-Mir-181-P1b  Cpo-Mir-181-P1b  Dno-Mir-181-P1b  Dre-Mir-181-P1b2  Ete-Mir-181-P1b  Gga-Mir-181-P1b  Gja-Mir-181-P1b  Gmo-Mir-181-P1b2  Hsa-Mir-181-P1b  Laf-Mir-181-P1b  Lch-Mir-181-P1b  Loc-Mir-181-P1b  Mal-Mir-181-P1b2  Mdo-Mir-181-P1b  Mml-Mir-181-P1b  Mmr-Mir-181-P1b  Mmu-Mir-181-P1b  Mun-Mir-181-P1b  Neu-Mir-181-P1b  Oan-Mir-181-P1b  Ocu-Mir-181-P1b  Pab-Mir-181-P1b  Pbv-Mir-181-P1b  Rno-Mir-181-P1b  Sha-Mir-181-P1b  Spt-Mir-181-P1b  Sto-Mir-181-P1b  Tgu-Mir-181-P1b  Tni-Mir-181-P1b1  Xla-Mir-181-P1b3  Xla-Mir-181-P1b4  Xtr-Mir-181-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009172.1: 29260045-29260104 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1b)		 Mir-181-P1b CM009172.1: 29260045-29260104 [+] UCSC Ensembl
Mir-181-P2b CM009172.1: 29261301-29261360 [+] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
CCAGGACCCAGCCUUCAGAGGACUCCAAGGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUUGAAAAAACCACCGACCGUUGACUGUACCUUGGGGUCCUUACAGACAACACUACAUUUC
Get precursor sequence
Structure
        10          20        30        40        50        60 
CCAGGACCCAGCCUUCA--|            A   U      CU       A  UUGGGAU 
                   GAGGACUCCAAGG ACA UCAACG  GUCGGUG GU       \
                   UUCCUGGGGUUCC UGU AGUUGC  CAGCCAC CA       U
CUUUACAUCACAACAGACA^            A   C      --       -  AAAAAGU 
.       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-181-P1b_5p
mirBase accessionMIMAT0013178
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
Get sequence
Star sequence

Eca-Mir-181-P1b_3p*
mirBase accessionNone
Sequence 
38- ACCACCGACCGUUGACUGUACC -60
Get sequence