MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-181-P1b

Family name MIR-181 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-181-P1a  Cmi-Mir-181-P1c  Cmi-Mir-181-P2a  Cmi-Mir-181-P2b  Cmi-Mir-181-P2c 
Orthologues Aca-Mir-181-P1b  Ami-Mir-181-P1b  Bta-Mir-181-P1b  Cfa-Mir-181-P1b  Cja-Mir-181-P1b  Cli-Mir-181-P1b  Cpi-Mir-181-P1b  Cpo-Mir-181-P1b  Dno-Mir-181-P1b  Dre-Mir-181-P1b2  Eca-Mir-181-P1b  Ete-Mir-181-P1b  Gga-Mir-181-P1b  Gja-Mir-181-P1b  Gmo-Mir-181-P1b2  Hsa-Mir-181-P1b  Laf-Mir-181-P1b  Lch-Mir-181-P1b  Loc-Mir-181-P1b  Mal-Mir-181-P1b2  Mdo-Mir-181-P1b  Mml-Mir-181-P1b  Mmr-Mir-181-P1b  Mmu-Mir-181-P1b  Mun-Mir-181-P1b  Neu-Mir-181-P1b  Oan-Mir-181-P1b  Ocu-Mir-181-P1b  Pab-Mir-181-P1b  Pbv-Mir-181-P1b  Rno-Mir-181-P1b  Sha-Mir-181-P1b  Spt-Mir-181-P1b  Sto-Mir-181-P1b  Tgu-Mir-181-P1b  Tni-Mir-181-P1b1  Xla-Mir-181-P1b3  Xla-Mir-181-P1b4  Xtr-Mir-181-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636038.1: 924893-924955 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1b)		 Mir-181-P2b KI636038.1: 923264-923325 [-] UCSC Ensembl
Mir-181-P1b KI636038.1: 924893-924955 [-] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
AUCAGUAUUUGCUUUCUGGUGGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGUGCUUUUCAGAUUAAACCAUCGAUCGUUGUCUGUACCUUGAGUUCAUCACUAACAUGCUUCAAAAGU
Get precursor sequence
Structure
        10          20        30        40        50        60  
AUCAGUAUUUGCUUUCU--|   GC     UGA   UU     CU       A    GUGCUU 
                   GGUG  UUCAG   ACA  CAACG  GUCGGUG GUUU      U
                   CUAC  GAGUU   UGU  GUUGC  UAGCUAC CAAA      U
UGAAAACUUCGUACAAUCA^   UU     CCA   CU     --       -    UUAGAC 
 120       110       100        90          80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-181-P1b_5p
mirBase accessionNone
Sequence 
0- AACAUUCAACGCUGUCGGUGAGUUU -25
Get sequence
Star sequence

Cmi-Mir-181-P1b_3p*
mirBase accessionNone
Sequence 
41- ACCAUCGAUCGUUGUCUGUACC -63
Get sequence