MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-181-P2a

Family name MIR-181 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-181-P1a  Cmi-Mir-181-P1b  Cmi-Mir-181-P1c  Cmi-Mir-181-P2b  Cmi-Mir-181-P2c 
Orthologues Aca-Mir-181-P2a  Ami-Mir-181-P2a  Bta-Mir-181-P2a  Cfa-Mir-181-P2a  Cja-Mir-181-P2a  Cli-Mir-181-P2a  Cpi-Mir-181-P2a  Cpo-Mir-181-P2a  Dno-Mir-181-P2a  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Eca-Mir-181-P2a  Ete-Mir-181-P2a  Gga-Mir-181-P2a  Gja-Mir-181-P2a  Gmo-Mir-181-P2a1  Hsa-Mir-181-P2a  Laf-Mir-181-P2a  Lch-Mir-181-P2a  Loc-Mir-181-P2a  Mal-Mir-181-P2a1  Mdo-Mir-181-P2a  Mml-Mir-181-P2a  Mmr-Mir-181-P2a  Mmu-Mir-181-P2a  Mun-Mir-181-P2a  Neu-Mir-181-P2a  Oan-Mir-181-P2a  Ocu-Mir-181-P2a  Pab-Mir-181-P2a  Pbv-Mir-181-P2a  Rno-Mir-181-P2a  Sha-Mir-181-P2a  Spt-Mir-181-P2a  Sto-Mir-181-P2a  Tgu-Mir-181-P2a  Tni-Mir-181-P2a1  Xla-Mir-181-P2a3  Xla-Mir-181-P2a4  Xtr-Mir-181-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635861.1: 13132847-13132907 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2a)		 Mir-181-P1a KI635861.1: 13132643-13132704 [+] UCSC Ensembl
Mir-181-P2a KI635861.1: 13132847-13132907 [+] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
CAAAAACAAGUCCCAGCAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUAUGAGGUAAAGCUCGCUGAACAAUGAAUGCAACUGCGGCCCAGAUUUUAGCAACUGCUUCGU
Get precursor sequence
Structure
        10        20          30        40        50        60 
CAAAAACAAGUCCCAGCAAA--|   A  AUCAA         CUG          UAACUA 
                      GGUC CA     CAUUCAUUG   UCGGUGGGUU      U
                      CCGG GU     GUAAGUAAC   AGUCGCUCGA      G
UGCUUCGUCAACGAUUUUAGAC^   C  CAAC-         A--          AAUGGA 
 .       110       100        90         80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-181-P2a_5p
mirBase accessionNone
Sequence 
0- AACAUUCAUUGCUGUCGGUGGGUU -24
Get sequence
Star sequence

Cmi-Mir-181-P2a_3p*
mirBase accessionNone
Sequence 
40- CUCGCUGAACAAUGAAUGCAA -61
Get sequence