MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-330

Family name MIR-330 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-330
Paralogues Eca-Mir-330-v1 
Orthologues Cfa-Mir-330  Laf-Mir-330 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009157.1: 16353448-16353511 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-330-v2)		 Mir-330-v1 CM009157.1: 16353448-16353511 [-] UCSC Ensembl
Mir-330-v2 CM009157.1: 16353448-16353511 [-] UCSC Ensembl
Variant

Eca-Mir-330-v2
Seed CAAAGCA
Precursor
(pre-Mir +30nt flank)		 
CGUGCUGUGUGAUCCUUGGCGUUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUUCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUGCGCUCCUUACGCGGCCCCCCUU
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Structure
        10         20         30          40         50        60 
CGUGCUGUGUGAUCCUU-     UCA-           --    -|   U   AG    UUCAAG 
                  GGCGU    CUGCCUCUCUG  GGCC UGUG CUU  GCUC      \
                  UCGCG    GACGGAGAGAC  CCGG ACAC GAA  CGAG      A
UUCCCCCCGGCGCAUUCC     UCGC           GU    C^   -   A-    CCAACU 
  120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-330-v2_5p*
mirBase accessionMIMAT0013012
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCUC -24
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Mature sequence

Eca-Mir-330-v2_3p
mirBase accessionNone
Sequence 
39- GCAAAGCACACGGCCUGCAGAGAGG -64
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Variant

Eca-Mir-330-v1
Seed CUCUGGG
Precursor
(pre-Mir +30nt flank)		 
CGUGCUGUGUGAUCCUUGGCGUUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUUCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUGCGCUCCUUACGCGGCCCCCCUU
Get precursor sequence
Structure
        10         20         30          40         50        60 
CGUGCUGUGUGAUCCUU-     UCA-           --    -|   U   AG   CUUCAAG 
                  GGCGU    CUGCCUCUCUG  GGCC UGUG CUU  GCU       \
                  UCGCG    GACGGAGAGAC  CCGG ACAC GAA  CGA       A
UUCCCCCCGGCGCAUUCC     UCGC           GU    C^   -   A-   GCCAACU 
  120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-330-v1_5p
mirBase accessionMIMAT0013012
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCU -23
Get sequence
Star sequence

Eca-Mir-330-v1_3p*
mirBase accessionNone
Sequence 
40- CAAAGCACACGGCCUGCAGAGAGG -64
Get sequence