MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-483

Family name MIR-483 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-483
Paralogues
Orthologues Bta-Mir-483-v1  Cfa-Mir-483  Cja-Mir-483  Cpo-Mir-483  Dno-Mir-483  Ete-Mir-483  Hsa-Mir-483  Mml-Mir-483  Mmr-Mir-483  Mmu-Mir-483  Neu-Mir-483  Ocu-Mir-483  Pab-Mir-483  Rno-Mir-483  Sha-Mir-483 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009159.1: 34440828-34440889 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-483-v1)		 Mir-483-v1 CM009159.1: 34440828-34440889 [-] UCSC Ensembl
Mir-483-v2 CM009159.1: 34440828-34440889 [-] UCSC Ensembl
Variant

Eca-Mir-483-v1
Seed ACUCCUC
Precursor
(pre-Mir +30nt flank)		 
GCCUUGGAGCCUGUGGUGGGGGAGCGGGGGAGGACGGGAGGGGAGGAGGGCGUGGUUUUAUGCAGCUCCUCACUCCUCUCCUCCCGUCUUCUUCUUCUUCCUCCCAUUCCUGCCUGUCUCGG
Get precursor sequence
Structure
        10          20        30        40         50          
GCCUUGGAGCCUGUGGU--       C                       -| CGUGGUUUU 
                   GGGGGAG GGGGGAGGACGGGAGGGGAGGAG GG         \
                   CUCCUUC UCUUCUUCUGCCCUCCUCUCCUC CU         A
GGCUCUGUCCGUCCUUACC       U                       A^ CCUCGACGU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-483-v1_5p*
mirBase accessionNone
Sequence 
0- AGGACGGGAGGGGAGGAGGGCG -22
Get sequence
Mature sequence

Eca-Mir-483-v1_3p
mirBase accessionMIMAT0034670
Sequence 
40- CACUCCUCUCCUCCCGUCUUCU -62
Get sequence
Variant

Eca-Mir-483-v2
Seed CACUCCU
Precursor
(pre-Mir +30nt flank)		 
GCCUUGGAGCCUGUGGUGGGGGAGCGGGGGAGGACGGGAGGGGAGGAGGGCGUGGUUUUAUGCAGCUCCUCACUCCUCUCCUCCCGUCUUCUUCUUCUUCCUCCCAUUCCUGCCUGUCUCGG
Get precursor sequence
Structure
        10          20        30        40         50          
GCCUUGGAGCCUGUGGU--       C                       -| CGUGGUUUU 
                   GGGGGAG GGGGGAGGACGGGAGGGGAGGAG GG         \
                   CUCCUUC UCUUCUUCUGCCCUCCUCUCCUC CU         A
GGCUCUGUCCGUCCUUACC       U                       A^ CCUCGACGU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-483-v2_5p*
mirBase accessionNone
Sequence 
0- AGGACGGGAGGGGAGGAGGGCGU -23
Get sequence
Mature sequence

Eca-Mir-483-v2_3p
mirBase accessionMIMAT0034670
Sequence 
39- UCACUCCUCUCCUCCCGUCUUCU -62
Get sequence