MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-1175-P1

Family name MIR-1175 (all species)
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1175-P2 
Orthologues Aae-Mir-1175  Agr-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Eba-Mir-1175  Gpa-Mir-1175  Gsa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pdu-Mir-1175  Pve-Mir-1175  Rph-Mir-1175  Sma-Mir-1175  Sne-Mir-1175  Snu-Mir-1175  Tca-Mir-1175  War-Mir-1175 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.20002: 3803-3861 [+]
Clustered miRNAs
(< 50kb from Mir-1175-P1)		 Mir-750-P1 Efet.01.20002: 2998-3060 [+]
Mir-1175-P1 Efet.01.20002: 3803-3861 [+]
Seed GAGAUUC
Precursor
(pre-Mir +30nt flank)		 
GCGAUCGGGUUUCAAAAUGGCGUCGUGGGUAGUGGAGCGAGUUCCAUCUCAUCAUUUGCUAAACGGUGAGAUUCAACUCCUCUGACUUUUCACGCGUCAAACUCAACGGAAUCGUCGUC
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Structure
        10           20        30         40        50         
GCGAUCGGGUUUCAAAA---|    U      U   -    C     CC        AUUUG 
                    UGGCG CGUGGG AGU GGAG GAGUU  AUCUCAUC     \
                    ACUGC GCACUU UCA UCUC CUCAA  UAGAGUGG     C
CUGCUGCUAAGGCAACUCAA^    -      U   G    -     CU        CAAAU 
       110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Efe-Mir-1175-P1_5p*
mirBase accessionNone
Sequence 
0- AGUGGAGCGAGUUCCAUCUCAUC -23
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Mature sequence

Efe-Mir-1175-P1_3p
mirBase accessionNone
Sequence 
36- UGAGAUUCAACUCCUCUGACUUU -59
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