MirGeneDB 3.0
MirGeneDB ID

Isc-Mir-1175

Family name MIR-1175 (all species)
Species Deer tick (Ixodes scapularis)
MiRBase ID
Paralogues
Orthologues Aae-Mir-1175  Aga-Mir-1175-v1  Agr-Mir-1175  Asu-Mir-1175  Ava-Mir-1175-P10  Ava-Mir-1175-P11  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Dya-Mir-1175-P3  Dya-Mir-1175-P4  Eba-Mir-1175  Efe-Mir-1175-P1  Efe-Mir-1175-P2  Gpa-Mir-1175  Gsa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Lpo-Mir-1175-P5  Lpo-Mir-1175-P6  Lpo-Mir-1175-P7  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pcr-Mir-1175-P12-v1  Pcr-Mir-1175-P13  Pdu-Mir-1175  Pve-Mir-1175  Rph-Mir-1175  Sma-Mir-1175  Sme-Mir-1175-P8  Sme-Mir-1175-P9  Sne-Mir-1175  Snu-Mir-1175  Tca-Mir-1175  Tur-Mir-1175-v1  War-Mir-1175 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCF_016920785.2_ASM1692078v2_ISC)		 NW_024609838.1: 27829237-27829298 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-1175)		 Mir-1175 NW_024609838.1: 27829237-27829298 [-] Ensembl
Mir-750 NW_024609838.1: 27830443-27830507 [-] Ensembl
Seed GAGAUUC
Precursor
(pre-Mir +30nt flank)		 
CAACGACGGACGACCGGGUGAUUCGGAGGCAAGUGGAGGAGUGGUCUCCUCUCUUUGCCAGACAAAAGUGAGAUUCAACUCCUCCAACUUCUCGCCGAUCACCAAACCCAUCACCGCAGCCA
Get precursor sequence
Structure
        10           20        30         40           50        
CAACGACGGACGACCGG---    U    A  C   -         --      -| CUCUUUG 
                    GUGA UCGG GG AAG UGGAGGAGU  GGUCUC CU       C
                    CACU AGCC CU UUC ACCUCCUCA  UUAGAG GA       C
ACCGACGCCACUACCCAAAC    -    G  C   A         AC      U^ AAACAGA 
120       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Sa Sa To
Star sequence

Isc-Mir-1175_5p*
mirBase accessionNone
Sequence 
0- AAGUGGAGGAGUGGUCUCCUC -21
Get sequence
Mature sequence

Isc-Mir-1175_3p
mirBase accessionNone
Sequence 
38- UGAGAUUCAACUCCUCCAACUUCU -62
Get sequence