| MirGeneDB ID | Esc-Mir-12532 |
|---|---|
| Family name | MIR-12532 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Obi-Mir-12532-v1 Ovu-Mir-12532-v1 |
| Node of Origin (locus) | Coleoidea |
| Node of Origin (family) | Coleoidea |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044491.1: 95688729-95688785 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-12532-v1) |
Mir-12532-v3
CM044491.1: 95688727-95688787 [-]
Ensembl
Mir-12532-v2 CM044491.1: 95688728-95688784 [-] Ensembl Mir-12532-v1 CM044491.1: 95688729-95688785 [-] Ensembl |
| Variant | Esc-Mir-12532-v1 |
| Seed | CCGCGAU |
| Precursor (pre-Mir +30nt flank) |
CGAUUUCUCAUUUUUCCACUGCAGUUGUUGUACGAACAAGUGGCUGUCGGUUGAAUUUUUAAGACAUCCGCGAUCACUUGUUGUAUGAAGGCAAACGCGUGGAGCUUUCAUCUUUAAGet precursor sequence |
| Structure | 10 20 30 40 50 CGAUUUCUCAUUUUUCCACU AG ---| G GC U U AAUUU GC UUGUU GUAC AACAAGUG UG CGG UG \ CG AACGG UAUG UUGUUCAC GC GCC AC U AAUUUCUACUUUCGAGGUG- CA AAG^ - UA - U AGAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Esc-Mir-12532-v1_5p* |
| mirBase accession | None |
| Sequence |
0- UACGAACAAGUGGCUGUCGGUUG -23
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|
| Mature sequence | Esc-Mir-12532-v1_3p |
| mirBase accession | None |
| Sequence |
36- UCCGCGAUCACUUGUUGUAUG -57
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|
| Variant | Esc-Mir-12532-v2 |
| Seed | UCCGCGA |
| Precursor (pre-Mir +30nt flank) |
GAUUUCUCAUUUUUCCACUGCAGUUGUUGUACGAACAAGUGGCUGUCGGUUGAAUUUUUAAGACAUCCGCGAUCACUUGUUGUAUGAAGGCAAACGCGUGGAGCUUUCAUCUUUAAAGet precursor sequence |
| Structure | 10 20 30 40 50 GAUUUCUCAUUUUUCCACU- AG ---| G GC U U AAUUU GC UUGUU GUAC AACAAGUG UG CGG UG \ CG AACGG UAUG UUGUUCAC GC GCC AC U AAAUUUCUACUUUCGAGGUG CA AAG^ - UA - U AGAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Esc-Mir-12532-v2_5p* |
| mirBase accession | None |
| Sequence |
0- ACGAACAAGUGGCUGUCGGUUGA -23
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|
| Mature sequence | Esc-Mir-12532-v2_3p |
| mirBase accession | None |
| Sequence |
34- AUCCGCGAUCACUUGUUGUAUGA -57
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|
| Variant | Esc-Mir-12532-v3 |
| Seed | GUACGAA |
| Precursor (pre-Mir +30nt flank) |
AACGAUUUCUCAUUUUUCCACUGCAGUUGUUGUACGAACAAGUGGCUGUCGGUUGAAUUUUUAAGACAUCCGCGAUCACUUGUUGUAUGAAGGCAAACGCGUGGAGCUUUCAUCUUUAAAAGet precursor sequence |
| Structure | 10 20 30 40 50 60 AACGAUUUCUCAUUUUUC U AG ---| G GC U UUGAAUUU CAC GC UUGUU GUAC AACAAGUG UG CGG \ GUG CG AACGG UAUG UUGUUCAC GC GCC U AAAAUUUCUACUUUCGAG - CA AAG^ - UA - UACAGAAU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Esc-Mir-12532-v3_5p |
| mirBase accession | None |
| Sequence |
0- UGUACGAACAAGUGGCUGUCGGU -23
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|
| Star sequence | Esc-Mir-12532-v3_3p* |
| mirBase accession | None |
| Sequence |
40- CGCGAUCACUUGUUGUAUGAA -61
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|
