MirGeneDB 3.0
MirGeneDB ID

Ete-Mir-199-P3

Family name MIR-199 (all species)
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-199-P1-v1  Ete-Mir-199-P2-v1  Ete-Mir-199-P3-v1 
Orthologues Aca-Mir-199-P3-v1  Ami-Mir-199-P3-v1  Bta-Mir-199-P3-v1  Cfa-Mir-199-P3-v1  Cja-Mir-199-P3-v1  Cpi-Mir-199-P3-v1  Cpo-Mir-199-P3-v1  Dre-Mir-199-P3-v1  Eca-Mir-199-P3-v1  Gja-Mir-199-P3-v1  Gmo-Mir-199-P3-v1  Hsa-Mir-199-P3-v1  Laf-Mir-199-P3-v1  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Mal-Mir-199-P3-v1  Mdo-Mir-199-P3-v1  Mml-Mir-199-P3-v1  Mmr-Mir-199-P3-v1  Mmu-Mir-199-P3-v1  Mun-Mir-199-P3-v1  Neu-Mir-199-P3-v1  Ocu-Mir-199-P3-v1  Pab-Mir-199-P3-v1  Pbv-Mir-199-P3-v1  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Tni-Mir-199-P3-v1  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(echTel2)		 JH980426: 1079700-1079760 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-199-P3-v3)		 Mir-199-P3-v1 JH980426: 1079700-1079760 [+] UCSC
Mir-199-P3-v2 JH980426: 1079700-1079760 [+] UCSC
Mir-199-P3-v3 JH980426: 1079700-1079760 [+] UCSC
Variant

Ete-Mir-199-P3-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
GGGCCCCGGCCCGGACACCGGCCCCGCCGUCCCAGUGUUCAGACUACCUGUUCAGGGCUCUCGAUGUGUACAGUAGUCUGCACAUUGGUUAGGCGGGGCUGGGUGAGCAGCGCCCCUGGGG
Get precursor sequence
Structure
        10          20        30        40        50        60
GGGCCCCGGCCCGGACA--|          GUC       U        C   UCAGGGCU 
                   CCGGCCCCGCC   CCAGUGU CAGACUAC UGU        C
                   GGUCGGGGCGG   GGUUACA GUCUGAUG ACA        U
GGGGUCCCCGCGACGAGUG^          AUU       C        -   UGUGUAGC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ete-Mir-199-P3-v3_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUU -22
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Mature sequence

Ete-Mir-199-P3-v3_3p
mirBase accessionNone
Sequence 
40- CAGUAGUCUGCACAUUGGUUA -61
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Variant

Ete-Mir-199-P3-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
GGGCCCCGGCCCGGACACCGGCCCCGCCGUCCCAGUGUUCAGACUACCUGUUCAGGGCUCUCGAUGUGUACAGUAGUCUGCACAUUGGUUAGGCGGGGCUGGGUGAGCAGCGCCCCUGGGG
Get precursor sequence
Structure
        10          20        30        40        50        60
GGGCCCCGGCCCGGACA--|          GUC       U        C   U AGGGCU 
                   CCGGCCCCGCC   CCAGUGU CAGACUAC UGU C      C
                   GGUCGGGGCGG   GGUUACA GUCUGAUG ACA G      U
GGGGUCCCCGCGACGAGUG^          AUU       C        -   U UGUAGC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ete-Mir-199-P3-v1_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
Get sequence
Mature sequence

Ete-Mir-199-P3-v1_3p
mirBase accessionNone
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Variant

Ete-Mir-199-P3-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
GGGCCCCGGCCCGGACACCGGCCCCGCCGUCCCAGUGUUCAGACUACCUGUUCAGGGCUCUCGAUGUGUACAGUAGUCUGCACAUUGGUUAGGCGGGGCUGGGUGAGCAGCGCCCCUGGGG
Get precursor sequence
Structure
        10          20        30        40        50        60
GGGCCCCGGCCCGGACA--|          GUC       U        C   U  GGGCU 
                   CCGGCCCCGCC   CCAGUGU CAGACUAC UGU CA     C
                   GGUCGGGGCGG   GGUUACA GUCUGAUG ACA GU     U
GGGGUCCCCGCGACGAGUG^          AUU       C        -   U  GUAGC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ete-Mir-199-P3-v2_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUCA -24
Get sequence
Mature sequence

Ete-Mir-199-P3-v2_3p
mirBase accessionNone
Sequence 
38- UACAGUAGUCUGCACAUUGGUUA -61
Get sequence