MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-2-P6

Family name MIR-2 (all species)
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-2-P1-v1  Gpa-Mir-2-P2a  Gpa-Mir-2-P2b  Gpa-Mir-2-P3a  Gpa-Mir-2-P3b  Gpa-Mir-2-P4a-v1  Gpa-Mir-2-P4b-v1  Gpa-Mir-2-P5-v1  Gpa-Mir-2-P7  Gpa-Mir-2-P8  Gpa-Mir-2-P9 
Orthologues Asu-Mir-2-o6  Dan-Mir-2-P6a  Dan-Mir-2-P6b  Dan-Mir-2-P6c  Dme-Mir-2-P6a  Dme-Mir-2-P6b  Dme-Mir-2-P6c  Dmo-Mir-2-P6a  Dmo-Mir-2-P6b  Dmo-Mir-2-P6c  Dsi-Mir-2-P6a  Dsi-Mir-2-P6b  Dsi-Mir-2-P6c  Dya-Mir-2-P6a  Dya-Mir-2-P6b  Dya-Mir-2-P6c  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Glossinidae + Drosophilidae
Node of Origin (family) Protostomia
Genome context
(GpalI1)		 Scaffold26: 93729-93811 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P6)		 Mir-3 Scaffold26: 89648-89709 [+] Ensembl
Mir-279-P1 Scaffold26: 90609-90682 [+] Ensembl
Mir-2-P5-v2 Scaffold26: 90894-90956 [+] Ensembl
Mir-2-P5-v1 Scaffold26: 90896-90954 [+] Ensembl
Mir-2-P6 Scaffold26: 93729-93811 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
UUUUUUUCCAAUAAAUUUUGUUUAAAUUGAAGAGAACAGUUAUUGCAGAUAUGUUUUCCAUUUGAGAAAUUCAUCAACAUUUUCAUAUUUAUAUCACAGUGGCUGUUCUUUUUUGAUUUAACAAAUACUCUACAAAGAAAAUA
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Structure
        10          20        30         40        50        60        70 
UUUUUUUCCAAUAAAUU--|    U    UG    -            CA      UUUUCCAUUUGAGAAAU 
                   UUGUU AAAU  AAGA GAACAGUUAUUG  GAUAUG                 U
                   AACAA UUUA  UUUU CUUGUCGGUGAC  CUAUAU                 C
AUAAAAGAAACAUCUCAUA^    -    GU    U            A-      UUAUACUUUUACAACUA 
 140       130       120        110       100         90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Gpa-Mir-2-P6_5p*
mirBase accessionNone
Sequence 
0- AGAGAACAGUUAUUGCAGAUAUG -23
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Mature sequence

Gpa-Mir-2-P6_3p
mirBase accessionNone
Sequence 
61- UAUCACAGUGGCUGUUCUUUUU -83
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