Mir-135-P1

MirGeneDB ID

Hsa-Mir-135-P1

Family name

MIR-135 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-135a-1

Paralogues

Hsa-Mir-135-P2 Hsa-Mir-135-P4

Orthologues

Aca-Mir-135-P1 Ami-Mir-135-P1 Bta-Mir-135-P1 Cfa-Mir-135-P1 Cja-Mir-135-P1 Cli-Mir-135-P1 Cmi-Mir-135-P1 Cpi-Mir-135-P1 Cpo-Mir-135-P1 Dno-Mir-135-P1 Dre-Mir-135-P1 Eca-Mir-135-P1 Ete-Mir-135-P1 Gga-Mir-135-P1 Gja-Mir-135-P1 Gmo-Mir-135-P1 Laf-Mir-135-P1 Lch-Mir-135-P1 Loc-Mir-135-P1 Mal-Mir-135-P1 Mml-Mir-135-P1 Mmr-Mir-135-P1 Mmu-Mir-135-P1 Mun-Mir-135-P1 Oan-Mir-135-P1 Ocu-Mir-135-P1 Pab-Mir-135-P1 Pbv-Mir-135-P1 Pma-Mir-135-o1 Rno-Mir-135-P1 Spt-Mir-135-P1 Sto-Mir-135-P1 Tgu-Mir-135-P1 Tni-Mir-135-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(hg38)

chr3: 52294233-52294292 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-135-P1)

Let-7-P2c3 chr3: 52268280-52268357 [-] UCSC Ensembl
Mir-135-P1 chr3: 52294233-52294292 [-] UCSC Ensembl

Seed

AUGGCUU

Precursor
(pre-Mir +30nt flank)

GCAAGAGCAGCCCCAGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGACAGCCAGCGGAGGGUUCU

Get precursor sequence

Structure

        10          20        30        40        50          
GCAAGAGCAGCCCCAGG--|        UCU          UU            UUCUAC 
                   CCUCGCUGU   CUAUGGCUUU  AUUCCUAUGUGA      \
                   GGGGCGGCA   GGUGCCGAGG  UAGGGAUAUACU      U
UCUUGGGAGGCGACCGACA^        CGC          U-            CACUCG 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-135-P1_5p

mirBase accession

MIMAT0000428

Sequence

0- UAUGGCUUUUUAUUCCUAUGUGA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000428
TargetScanVert: hsa-miR-135a-5p
TargetMiner: hsa-miR-135a-5p
miRDB: MIMAT0000428

Star sequence

Hsa-Mir-135-P1_3p*

mirBase accession

MIMAT0004595

Sequence

38- AUAUAGGGAUUGGAGCCGUGGC -60

Get sequence

Proposed targets

microrna.org: MIMAT0004595
TargetScanVert: hsa-miR-135a-3p
TargetMiner: hsa-miR-135a-3p
miRDB: MIMAT0004595