MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-135-P1

Family name MIR-135 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-135b
Paralogues Tni-Mir-135-P2a  Tni-Mir-135-P2b  Tni-Mir-135-P4a  Tni-Mir-135-P4b 
Orthologues Aca-Mir-135-P1  Ami-Mir-135-P1  Bta-Mir-135-P1  Cfa-Mir-135-P1  Cja-Mir-135-P1  Cli-Mir-135-P1  Cmi-Mir-135-P1  Cpi-Mir-135-P1  Cpo-Mir-135-P1  Dno-Mir-135-P1  Dre-Mir-135-P1  Eca-Mir-135-P1  Ete-Mir-135-P1  Gga-Mir-135-P1  Gja-Mir-135-P1  Gmo-Mir-135-P1  Hsa-Mir-135-P1  Laf-Mir-135-P1  Lch-Mir-135-P1  Loc-Mir-135-P1  Mal-Mir-135-P1  Mml-Mir-135-P1  Mmr-Mir-135-P1  Mmu-Mir-135-P1  Mun-Mir-135-P1  Oan-Mir-135-P1  Ocu-Mir-135-P1  Pab-Mir-135-P1  Pbv-Mir-135-P1  Pma-Mir-135-o1  Rno-Mir-135-P1  Spt-Mir-135-P1  Sto-Mir-135-P1  Tgu-Mir-135-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 9: 635490-635549 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-135-P1)		 Mir-135-P1 9: 635490-635549 [+] UCSC Ensembl
Mir-191 9: 665421-665482 [+] UCSC Ensembl
Mir-425 9: 665884-665947 [+] UCSC Ensembl
Seed AUGGCUU
Precursor
(pre-Mir +30nt flank)		 
AAUCCAGUCUUCCCAAUGCCCAGUGCGCUGUAUGGCUUUUUAUUCCUAUCUGACUGUACUGAGAGUUCAUAUAGGGAUGGAAGCCAUGCACCGCGCUGGGAGCACAGCGCACUGGACCAU
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Structure
        10          20        30        40        50          
AAUCCAGUCUUCCCAAUG--|        C            U        C   CUGUAC 
                    CCCAGUGCG UGUAUGGCUUUU AUUCCUAU UGA      \
                    GGGUCGCGC ACGUACCGAAGG UAGGGAUA ACU      U
UACCAGGUCACGCGACACGA^        C            -        U   UGAGAG 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Sp Sp Sp To
Mature sequence

Tni-Mir-135-P1_5p
mirBase accessionMIMAT0003031
Sequence 
0- UAUGGCUUUUUAUUCCUAUCUGA -23
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Star sequence

Tni-Mir-135-P1_3p*
mirBase accessionNone
Sequence 
38- AUAUAGGGAUGGAAGCCAUGCA -60
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