Mir-17-P1d

MirGeneDB ID

Hsa-Mir-17-P1d

Family name

MIR-17 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-106b

Paralogues

Hsa-Mir-17-P1a Hsa-Mir-17-P1c Hsa-Mir-17-P2a Hsa-Mir-17-P2c Hsa-Mir-17-P4a Hsa-Mir-17-P4c Hsa-Mir-17-P4d

Orthologues

Ami-Mir-17-P1d Bta-Mir-17-P1d Cfa-Mir-17-P1d Cja-Mir-17-P1d Cmi-Mir-17-P1d Cpi-Mir-17-P1d Cpo-Mir-17-P1d Dno-Mir-17-P1d Eca-Mir-17-P1d Ete-Mir-17-P1d Gmo-Mir-17-P1d Laf-Mir-17-P1d Lch-Mir-17-P1d Loc-Mir-17-P1d Mal-Mir-17-P1d Mml-Mir-17-P1d Mmr-Mir-17-P1d Mmu-Mir-17-P1d Ocu-Mir-17-P1d Pab-Mir-17-P1d Rno-Mir-17-P1d Sto-Mir-17-P1d Tni-Mir-17-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr7: 100094002-100094063 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1d)

Mir-92-P2d chr7: 100093571-100093630 [-] UCSC Ensembl
Mir-17-P4d chr7: 100093776-100093837 [-] UCSC Ensembl
Mir-17-P1d chr7: 100094002-100094063 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

CCCCACCUCCCGCUCCAGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACGCACAGCGUCCGUGGAG

Get precursor sequence

Structure

        10          20        30         40        50          
CCCCACCUCCCGCUCCA--       C     UA-|      G       AGAUAGUGGUCC 
                   GCCCUGC GGGGC   AAGUGCU ACAGUGC            \
                   CGGGACG CCUCG   UUCAUGG UGUCACG            U
GAGGUGCCUGCGACACGCA       A     UCG^      G       CCAUCGUGCCUC 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There are Dicer cuts +1 and +2 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-17-P1d_5p

mirBase accession

MIMAT0000680

Sequence

0- UAAAGUGCUGACAGUGCAGAU -21

Get sequence

Proposed targets

microrna.org: MIMAT0000680
TargetScanVert: hsa-miR-106b-5p
TargetMiner: hsa-miR-106b-5p
miRDB: MIMAT0000680

Co-mature sequence

Hsa-Mir-17-P1d_3p

mirBase accession

MIMAT0004672

Sequence

40- CCGCACUGUGGGUACUUGCUGC -62

Get sequence

Proposed targets

microrna.org: MIMAT0004672
TargetScanVert: hsa-miR-106b-3p
TargetMiner: hsa-miR-106b-3p
miRDB: MIMAT0004672