Mir-17-P4d

MirGeneDB ID

Hsa-Mir-17-P4d

Family name

MIR-17 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-93

Paralogues

Hsa-Mir-17-P1a Hsa-Mir-17-P1c Hsa-Mir-17-P1d Hsa-Mir-17-P2a Hsa-Mir-17-P2c Hsa-Mir-17-P4a Hsa-Mir-17-P4c

Orthologues

Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cja-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Laf-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Pab-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4 Xtr-Mir-17-P4d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr7: 100093776-100093837 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4d)

Mir-92-P2d chr7: 100093571-100093630 [-] UCSC Ensembl
Mir-17-P4d chr7: 100093776-100093837 [-] UCSC Ensembl
Mir-17-P1d chr7: 100094002-100094063 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

UCCCGUCUUGGACCUCAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCCAACCUACUGCUGAGCUAGCACUUCCCGAGCCCCCGGGACACGUUCUCUCUGCCAAUUG

Get precursor sequence

Structure

        10          20        30          40        50        60
UCCCGUCUUGGACCUCA--             CA-       -|    U    G   UGUGAU 
                   GUCCUGGGGGCUC   AAGUGCU GUUCG GCAG UAG      U
                   CAGGGCCCCCGAG   UUCACGA CGAGU CGUC AUC      A
GUUAACCGUCUCUCUUGCA             CCC       U^    -    -   CAACCC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-17-P4d_5p

mirBase accession

MIMAT0000093

Sequence

0- CAAAGUGCUGUUCGUGCAGGUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000093
TargetScanVert: hsa-miR-93-5p
TargetMiner: hsa-miR-93-5p
miRDB: MIMAT0000093

Star sequence

Hsa-Mir-17-P4d_3p*

mirBase accession

MIMAT0004509

Sequence

39- ACUGCUGAGCUAGCACUUCCCGA -62

Get sequence

Proposed targets

microrna.org: MIMAT0004509
TargetScanVert: hsa-miR-93-3p
TargetMiner: hsa-miR-93-3p
miRDB: MIMAT0004509