| MirGeneDB ID | Lch-Mir-17-P4d |
|---|---|
| Family name | MIR-17 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-17-P1a Lch-Mir-17-P1c Lch-Mir-17-P1d Lch-Mir-17-P2a Lch-Mir-17-P2c Lch-Mir-17-P4a Lch-Mir-17-P4c |
| Orthologues | Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cja-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Hsa-Mir-17-P4d Laf-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Pab-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4 Xtr-Mir-17-P4d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH128754.1: 150663-150723 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-17-P4d) |
Mir-17-P1d
JH128754.1: 148690-148752 [+]
Ensembl
Mir-17-P4d JH128754.1: 150663-150723 [+] Ensembl Mir-19-P2d JH128754.1: 155359-155420 [+] Ensembl Mir-92-P2d JH128754.1: 158754-158813 [+] Ensembl |
| Seed | AAAGUGC |
| Precursor (pre-Mir +30nt flank) |
AGCUGGCCUGAAGAUUUCUCUCUGUAGCUCCAAAGUGCUGUUAGUGCAGGUAGUGUGUGUUGGUACCUACUGCAAGACCAGCACUUCCAGAGCUCUCGAGGGUACAGACGCACACGGCAGCGet precursor sequence |
| Structure | 10 20 30 40 50 AGCUGGCCUGAAGAUUU-- UGU CA-| UUAG G UGUGUG CUCUC AGCUC AAGUGCUG UGCAG UAG \ GGGAG UCGAG UUCACGAC ACGUC AUC U CGACGGCACACGCAGACAU CUC ACC^ CAGA - CAUGGU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Mature sequence | Lch-Mir-17-P4d_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CAAAGUGCUGUUAGUGCAGGUAG -23
Get sequence
|
| Star sequence | Lch-Mir-17-P4d_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- ACUGCAAGACCAGCACUUCCAGA -61
Get sequence
|
