| MirGeneDB ID | Lch-Mir-19-P2d |
|---|---|
| Family name | MIR-19 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-19-P1a Lch-Mir-19-P2a Lch-Mir-19-P2c |
| Orthologues | Cmi-Mir-19-P2d Dre-Mir-19-P2d Gmo-Mir-19-P2d Loc-Mir-19-P2d Mal-Mir-19-P2d Mun-Mir-19-P2d Tni-Mir-19-P2d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH128754.1: 155359-155420 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-19-P2d) |
Mir-17-P1d
JH128754.1: 148690-148752 [+]
Ensembl
Mir-17-P4d JH128754.1: 150663-150723 [+] Ensembl Mir-19-P2d JH128754.1: 155359-155420 [+] Ensembl Mir-92-P2d JH128754.1: 158754-158813 [+] Ensembl |
| Seed | GUGCAAA |
| Precursor (pre-Mir +30nt flank) |
GCUUUUUUCUGUGUUCUGCUGGUUCCGGUCCGUUUUGCUGGGUUGCAGUCAGUUUGUUUCAGAGCCCGCUGUGCAAACCCAUGCAAAACUGACUGUAGCUAAAGCUCGGAGCUGCCUAGAACGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCUUUUUUCUGUGUUCUGC-- C C - -| GU UUGUUU UGGUU CGGUC GUUUUGC UGGG UUGCA CAGU C AUCGA GUCAG CAAAACG ACCC AACGU GUCG A CAAGAUCCGUCGAGGCUCGAA U U U A^ -- CCCGAG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Star sequence | Lch-Mir-19-P2d_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CGUUUUGCUGGGUUGCAGUCAGU -23
Get sequence
|
| Mature sequence | Lch-Mir-19-P2d_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UGUGCAAACCCAUGCAAAACUGA -62
Get sequence
|
