MirGeneDB 3.0
MirGeneDB ID

Mun-Mir-17-P4d

Family name MIR-17 (all species)
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-17-P1a  Mun-Mir-17-P1c  Mun-Mir-17-P2a  Mun-Mir-17-P2c  Mun-Mir-17-P4a 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_901765095.2_aMicUni1.2)		 LR594645.1: 20661180-20661241 [-]
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-19-P2d LR594645.1: 20660764-20660826 [-]
Mir-17-P4d LR594645.1: 20661180-20661241 [-]
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UCUAUCUUGGAAUGAAAGUCCAACGGGCUCCAAAGUGCUAUUCGUGCAGGUAGUGUGAAAACUUACUCUACUGCAAAAGCAGCACUUAAAGAGCCCCCAAGGACACGAGCAGCGUUGGAACC
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Structure
        10         20         30         40        50        60
UCUAUCUUGGAAUGAAA-    AAC-      CA-|      A  CG     G   UGUGAA 
                  GUCC    GGGCUC   AAGUGCU UU  UGCAG UAG      A
                  CAGG    CCCGAG   UUCACGA GA  ACGUC AUC      A
CCAAGGUUGCGACGAGCA    AACC      AAA^      C  AA     -   UCAUUC 
120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Mun-Mir-17-P4d_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUAUUCGUGCAGGUAG -23
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Star sequence

Mun-Mir-17-P4d_3p* (predicted)
mirBase accessionNone
Sequence 
39- ACUGCAAAAGCAGCACUUAAAGA -62
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