| MirGeneDB ID | Lch-Mir-17-P1c |
|---|---|
| Family name | MIR-17 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-17-P1a Lch-Mir-17-P1d Lch-Mir-17-P2a Lch-Mir-17-P2c Lch-Mir-17-P4a Lch-Mir-17-P4c Lch-Mir-17-P4d |
| Orthologues | Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126623.1: 2113883-2113940 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-17-P1c) |
Mir-17-P1c
JH126623.1: 2113883-2113940 [+]
Ensembl
Mir-17-P2c JH126623.1: 2114050-2114114 [+] Ensembl Mir-17-P4c JH126623.1: 2114536-2114596 [+] Ensembl Mir-19-P2c JH126623.1: 2114677-2114757 [+] Ensembl Mir-92-P2c JH126623.1: 2115244-2115306 [+] Ensembl |
| Seed | AAAGUGC |
| Precursor (pre-Mir +30nt flank) |
AAUUCCAUAAGAGAUGGGUUGGAGUUAUGCAAAAGUGCUUACAGUGCAGGUAGUAAGCAGUCUCUACUGCAGUGCAAGCACUUCUAGCAUUGCUUUGACAAUUACUCUAAGGAGGAAUGet precursor sequence |
| Structure | 10 20 30 40 50 AAUUCCAUAAGAGAUGG-- UG U AA-| A G G UAAG GU GAGU AUGC AAGUGCUU CA UGCAG UAG C CA UUCG UACG UUCACGAA GU ACGUC AUC A UAAGGAGGAAUCUCAUUAA GU U AUC^ C G - UCUG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Lch-Mir-17-P1c_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
|
| Star sequence | Lch-Mir-17-P1c_3p* (predicted) |
| mirBase accession | None |
| Sequence |
35- ACUGCAGUGCAAGCACUUCUAGC -58
Get sequence
|
