MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-17-P1c

Family name MIR-17 (all species)
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-106a
Paralogues Mmu-Mir-17-P1a  Mmu-Mir-17-P1d  Mmu-Mir-17-P2a  Mmu-Mir-17-P2c  Mmu-Mir-17-P4a  Mmu-Mir-17-P4c  Mmu-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)		 chrX: 52742505-52742563 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c)		 Mir-92-P2c chrX: 52741697-52741761 [-] UCSC Ensembl
Mir-92-P1c chrX: 52741853-52741913 [-] UCSC Ensembl
Mir-19-P2c chrX: 52741991-52742056 [-] UCSC Ensembl
Mir-17-P4c chrX: 52742121-52742181 [-] UCSC Ensembl
Mir-17-P2c chrX: 52742341-52742403 [-] UCSC Ensembl
Mir-17-P1c chrX: 52742505-52742563 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UUACACUCCUGGAGUAUGCCUUGGCCAUGUCAAAGUGCUAACAGUGCAGGUAGCUUUUUGAGUUCUACUGCAGUGCCAGCACUUCUUACAUUACCAUGGUGAUUUAAUCAGAGGCCGCU
Get precursor sequence
Structure
        10          20        30         40        50         
UUACACUCCUGGAGUAU--   U   CC    CA-|      AA  G     G   CUUUU 
                   GCC UGG  AUGU   AAGUGCU  CA UGCAG UAG     \
                   UGG ACC  UACA   UUCACGA  GU ACGUC AUC     U
UCGCCGGAGACUAAUUUAG   U   AU    UUC^      CC  G     -   UUGAG 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-17-P1c_5p
mirBase accessionMIMAT0000385
Sequence 
0- CAAAGUGCUAACAGUGCAGGUAG -23
Get sequence
Proposed targets microrna.org: MIMAT0000385
TargetScanVert: mmu-miR-106a-5p
miRDB: MIMAT0000385
Star sequence

Mmu-Mir-17-P1c_3p*
mirBase accessionMIMAT0017009
Sequence 
36- ACUGCAGUGCCAGCACUUCUUAC -59
Get sequence
Proposed targets TargetScanVert: mmu-miR-106a-3p
miRDB: MIMAT0017009