| MirGeneDB ID | Lch-Mir-17-P4c |
|---|---|
| Family name | MIR-17 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-17-P1a Lch-Mir-17-P1c Lch-Mir-17-P1d Lch-Mir-17-P2a Lch-Mir-17-P2c Lch-Mir-17-P4a Lch-Mir-17-P4d |
| Orthologues | Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126623.1: 2114536-2114596 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-17-P4c) |
Mir-17-P1c
JH126623.1: 2113883-2113940 [+]
Ensembl
Mir-17-P2c JH126623.1: 2114050-2114114 [+] Ensembl Mir-17-P4c JH126623.1: 2114536-2114596 [+] Ensembl Mir-19-P2c JH126623.1: 2114677-2114757 [+] Ensembl Mir-92-P2c JH126623.1: 2115244-2115306 [+] Ensembl |
| Seed | AAAGUGC |
| Precursor (pre-Mir +30nt flank) |
GAAAGUUAUUUUUUUUUGUCCAUGCAGUUCCAAAGUGCUCAUUGUGCAGGUAGUAUUAAAUAAAACCUACUGUAAUAUGAGCACUUAUAGUACUGCUGGAUAGCAAUUGUUGACUUCUGCCGet precursor sequence |
| Structure | 10 20 30 40 50 GAAAGUUAUUUUUUUUU---| U UCCA- UG G UAUUAA GUCCA GCAGU AAGUGCUCAU UGCAG UAG \ UAGGU CGUCA UUCACGAGUA AUGUC AUC A CCGUCUUCAGUUGUUAACGA^ - UGAUA UA - CAAAAU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Lch-Mir-17-P4c_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CAAAGUGCUCAUUGUGCAGGUAG -23
Get sequence
|
| Star sequence | Lch-Mir-17-P4c_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- ACUGUAAUAUGAGCACUUAUAGU -61
Get sequence
|
