| MirGeneDB ID | Spt-Mir-17-P4c |
|---|---|
| Family name | MIR-17 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-17-P1a Spt-Mir-17-P1c Spt-Mir-17-P2a Spt-Mir-17-P2c Spt-Mir-17-P4a |
| Orthologues | Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01011901.1: 25208361-25208422 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-17-P4c) |
Mir-17-P1c
QEPC01011901.1: 25207986-25208045 [+]
UCSC
Ensembl
Mir-17-P2c QEPC01011901.1: 25208168-25208232 [+] UCSC Ensembl Mir-17-P4c QEPC01011901.1: 25208361-25208422 [+] UCSC Ensembl Mir-19-P2c QEPC01011901.1: 25208490-25208549 [+] UCSC Ensembl Mir-92-P1c QEPC01011901.1: 25208662-25208723 [+] UCSC Ensembl Mir-92-P2c QEPC01011901.1: 25208800-25208864 [+] UCSC Ensembl |
| Seed | AAAGUGC |
| Precursor (pre-Mir +30nt flank) |
GAAUUCGAGCCGAUUUCAUCCUAGCAGUAUCAAAGUGCUCAUAGUGCAGGUAGUUAUUGAACCAGAUCUACUGUAAUGUGGGCACUUACAGUACUGCCAGAAAAAAUGCGUCUUGCUCCCUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 GAAUUCGAGCCGAUUUCAUC-- A CA-| G G UUAUUG CU GCAGUAU AAGUGCUCAUA UGCAG UAG A GA CGUCAUG UUCACGGGUGU AUGUC AUC A GUCCCUCGUUCUGCGUAAAAAA C ACA^ A - UAGACC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-17-P4c_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CAAAGUGCUCAUAGUGCAGGUAG -23
Get sequence
|
| Star sequence | Spt-Mir-17-P4c_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- ACUGUAAUGUGGGCACUUACAGU -62
Get sequence
|
