Mir-873-v2

MirGeneDB ID

Hsa-Mir-873

Family name

MIR-873 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-873

Paralogues

Hsa-Mir-873-v1

Orthologues

Laf-Mir-873 Mmr-Mir-873

Node of Origin (locus)

Mammalia

Node of Origin (family)

Mammalia

Genome context
(hg38)

chr9: 28888889-28888945 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-873-v2)

Mir-876-v2 chr9: 28863634-28863696 [-] UCSC Ensembl
Mir-876-v1 chr9: 28863636-28863694 [-] UCSC Ensembl
Mir-873-v1 chr9: 28888888-28888946 [-] UCSC Ensembl
Mir-873-v2 chr9: 28888889-28888945 [-] UCSC Ensembl

Variant

Hsa-Mir-873-v2

Seed

CAGGAAC

Precursor
(pre-Mir +30nt flank)

UUCCUGCUUAGAAUAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUAC

Get precursor sequence

Structure

        10          20        30        40        50        
UUCCUGCUUAGAAUAAG--|     UGCAUUUGCA      UG G        AUUGAA 
                   UUUGUG          GGAACU  U AGUCUCCU      \
                   AAACAC          CCUUGA  A UCAGAGGA      A
CAUCUUUACUCAUCCUUCU^     CCACAAGGGC      GU G        CAAGUA 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-873-v2_5p

mirBase accession

MIMAT0004953

Sequence

0- GCAGGAACUUGUGAGUCUCCUA -22

Get sequence

Proposed targets

microrna.org: MIMAT0004953
TargetScanVert: hsa-miR-873-5p.1
TargetMiner: hsa-miR-873-5p
miRDB: MIMAT0004953

Star sequence

Hsa-Mir-873-v2_3p*

mirBase accession

MIMAT0022717

Sequence

35- GGAGACUGAUGAGUUCCCGGGA -57

Get sequence

Proposed targets

TargetScanVert: hsa-miR-873-3p
TargetMiner: hsa-miR-873-3p
miRDB: MIMAT0022717

Variant

Hsa-Mir-873-v1

Seed

GCAGGAA

Precursor
(pre-Mir +30nt flank)

GUUCCUGCUUAGAAUAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUACU

Get precursor sequence

Structure

        10          20        30        40        50         
GUUCCUGCUUAGAAUAA--|      UGCAUUUGCA      UG G        AUUGAA 
                   GUUUGUG          GGAACU  U AGUCUCCU      \
                   UAAACAC          CCUUGA  A UCAGAGGA      A
UCAUCUUUACUCAUCCUUC^      CCACAAGGGC      GU G        CAAGUA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-873-v1_5p

mirBase accession

MIMAT0004953

Sequence

0- UGCAGGAACUUGUGAGUCUCCU -22

Get sequence

Proposed targets

microrna.org: MIMAT0004953
TargetScanVert: hsa-miR-873-5p.1
TargetMiner: hsa-miR-873-5p
miRDB: MIMAT0004953

Co-mature sequence

Hsa-Mir-873-v1_3p

mirBase accession

MIMAT0022717

Sequence

37- GAGACUGAUGAGUUCCCGGGAA -59

Get sequence

Proposed targets

TargetScanVert: hsa-miR-873-3p
TargetMiner: hsa-miR-873-3p
miRDB: MIMAT0022717