Mir-277

MirGeneDB ID

Isc-Mir-277

Family name

MIR-277 (all species)

Species

Deer tick (Ixodes scapularis)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-277 Aga-Mir-277 Agr-Mir-277 Ava-Mir-277-P10 Ava-Mir-277-P11 Bge-Mir-277 Bko-Mir-277 Bpl-Mir-277 Cbr-Mir-277-P6a Cbr-Mir-277-P6b Cel-Mir-277 Csc-Mir-277-P18a Csc-Mir-277-P18b Cte-Mir-277-P1 Cte-Mir-277-P2 Dan-Mir-277 Dgr-Mir-277-P19 Dgr-Mir-277-P20 Dgr-Mir-277-P21 Dlo-Mir-277 Dma-Mir-277 Dme-Mir-277 Dmo-Mir-277 Dpu-Mir-277 Dsi-Mir-277 Dya-Mir-277 Eba-Mir-277 Efe-Mir-277 Egr-Mir-277-P7 Egr-Mir-277-P8 Egr-Mir-277-P9 Esc-Mir-277 Gpa-Mir-277 Gsa-Mir-277-P8 Gsa-Mir-277-P9 Gsp-Mir-277 Hme-Mir-277 Hru-Mir-277 Lan-Mir-277-P3 Lan-Mir-277-P4 Lan-Mir-277-P5 Lgi-Mir-277 Llo-Mir-277 Lpo-Mir-277-P12 Lpo-Mir-277-P13 Lpo-Mir-277-P14 Lpo-Mir-277-P15 Lpo-Mir-277-P16 Lpo-Mir-277-P17 Mgi-Mir-277 Mom-Mir-277 Npo-Mir-277 Obi-Mir-277 Ofu-Mir-277-P22 Ofu-Mir-277-P23 Ovu-Mir-277 Pau-Mir-277 Pca-Mir-277 Pcr-Mir-277 Pdu-Mir-277 Pve-Mir-277 Rph-Mir-277 Sma-Mir-277-P7 Sma-Mir-277-P8 Sme-Mir-277-P7a Sme-Mir-277-P7b Sme-Mir-277-P8a Sme-Mir-277-P8b Sne-Mir-277 Snu-Mir-277 Tca-Mir-277 Tur-Mir-277 War-Mir-277

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(GCF_016920785.2_ASM1692078v2_ISC)

NW_024609835.1: 44973543-44973605 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-277)

Mir-34 NW_024609835.1: 44952210-44952269 [-] Ensembl
Mir-277 NW_024609835.1: 44973543-44973605 [-] Ensembl
Mir-317 NW_024609835.1: 44980128-44980191 [-] Ensembl

Seed

AAAUGCA

Precursor
(pre-Mir +30nt flank)

GUUUAUCCUGGCUCAGCGCGCGGGUGGCUUCGUUCCAGUGUUGCAUUUACAAUGUGACGUAGCGAUGGCUGUAAAUGCAUUAUCUGGAAUGCAAGGCGUCCGCGCCCGCUCUCCUCCUCCGCC

Get precursor sequence

Structure

        10         20        30         40         50        60
GUUUAUCCUGGCUCAGC-      GU G   -        UGU-|         AUGUGACG 
                  GCGCGG  G CUU CGUUCCAG    UGCAUUUACA        U
                  CGCGCC  C GAA GUAAGGUC    ACGUAAAUGU        A
CCGCCUCCUCCUCUCGCC      UG G   C        UAUU^         CGGUAGCG 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Sa	Sa	To

Star sequence

Isc-Mir-277_5p*

mirBase accession

None

Sequence

0- CGUUCCAGUGUUGCAUUUACA -21

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Mature sequence

Isc-Mir-277_3p

mirBase accession

None

Sequence

41- UAAAUGCAUUAUCUGGAAUGCA -63

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