MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-2-o100

Family name MIR-2 (all species)
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-2-o101a  Lan-Mir-2-o101b  Lan-Mir-2-o102  Lan-Mir-2-o103  Lan-Mir-2-o104  Lan-Mir-2-o105  Lan-Mir-2-o106a  Lan-Mir-2-o106b  Lan-Mir-2-o107  Lan-Mir-2-o108 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)		 LFEI01000138: 116653-116710 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o100)		 Mir-2-o100 LFEI01000138: 116653-116710 [-] Ensembl
Mir-2-o106b LFEI01000138: 117664-117723 [-] Ensembl
Mir-71-P5 LFEI01000138: 119259-119316 [-] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
UUUUGUUUUGAAGUAUUUGCUUCCCAUAGCCAUUAGAGGGGUUGUGAUGUGUCUUAGUGAUAUCAUAUCACAGCCUGCUUUGAUGAGCUAUUGGCUGCUUUCCUCAGCACUGAAAUUA
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Structure
        10          20        30          40        50       
UUUUGUUUUGAAGUAUUU--  UU  C     -        -|            UCUUA 
                    GC  CC AUAGC CAUUAGAG GGGUUGUGAUGUG     G
                    CG  GG UAUCG GUAGUUUC UCCGACACUAUAC     U
AUUAAAGUCACGACUCCUUU  UC  U     A        G^            UAUAG 
      110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Lan-Mir-2-o100_5p* (predicted)
mirBase accessionNone
Sequence 
0- CAUUAGAGGGGUUGUGAUGUG -21
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Mature sequence

Lan-Mir-2-o100_3p
mirBase accessionNone
Sequence 
35- UAUCACAGCCUGCUUUGAUGAGC -58
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