MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-2-o107

Family name MIR-2 (all species)
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-2-o100  Lan-Mir-2-o101a  Lan-Mir-2-o101b  Lan-Mir-2-o102  Lan-Mir-2-o103  Lan-Mir-2-o104  Lan-Mir-2-o105  Lan-Mir-2-o106a  Lan-Mir-2-o106b  Lan-Mir-2-o108 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)		 LFEI01002046: 30083-30141 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o107)		 Mir-71-P4 LFEI01002046: 27476-27533 [+] Ensembl
Mir-2-o106a LFEI01002046: 29074-29133 [+] Ensembl
Mir-2-o101a LFEI01002046: 29414-29471 [+] Ensembl
Mir-2-o101b LFEI01002046: 29414-29471 [+] Ensembl
Mir-2-o107 LFEI01002046: 30083-30141 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
AUUUUGUUUUGAAGUAUUUGCUUCCCAUAGCCAUUGGAGGGGUUGUGAUGUGUCUAAGAGAUAUCAUAUCACAGCCUGCUUUGAUGAGCUAUUGGCUGCUUUCCUCAACACUGAAAUUA
Get precursor sequence
Structure
        10         20        30          40        50        
AUUUUGUUUUGAAGUAUUU-  UU  C     -   UG   -|            UCUAA 
                    GC  CC AUAGC CAU  GAG GGGUUGUGAUGUG     G
                    CG  GG UAUCG GUA  UUC UCCGACACUAUAC     A
AUUAAAGUCACAACUCCUUU  UC  U     A   GU   G^            UAUAG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To
Star sequence

Lan-Mir-2-o107_5p*
mirBase accessionNone
Sequence 
0- CCAUUGGAGGGGUUGUGAUGUG -22
Get sequence
Mature sequence

Lan-Mir-2-o107_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCCUGCUUUGAUGAGC -59
Get sequence