| MirGeneDB ID | Lch-Mir-456 |
|---|---|
| Family name | MIR-456 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-456 Ami-Mir-456 Cli-Mir-456 Cmi-Mir-456 Cpi-Mir-456 Dre-Mir-456 Ebu-Mir-456 Gga-Mir-456 Gja-Mir-456 Gmo-Mir-456 Loc-Mir-456 Mal-Mir-456 Mun-Mir-456 Pbv-Mir-456 Pma-Mir-456 Sto-Mir-456 Tgu-Mir-456 Xla-Mir-456-P1 Xla-Mir-456-P2 Xtr-Mir-456 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126700.1: 1144993-1145053 [-] Ensembl |
| Seed | AGGCUGG |
| Precursor (pre-Mir +30nt flank) |
GGGACAUUCUUGAUAUUGCUGUGUGUGUGUGCAGGCAUCUUCCCAGCCUACAUGUGGAUUCCUAAAUCUGCAGGCUGGUUAGAUGGUUGUCGUACAUUCAGUUCAUCUCCAUGGAUCUGGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGGACAUUCUUGAUAUU--| U U G UC A UGUGGAU GCUG GUGUGUG GCAG CAUCU CCAGCCU CA U UGAC UACAUGC UGUU GUAGA GGUCGGA GU C CGGUCUAGGUACCUCUACU^ U - G UU C CUAAAUC . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Star sequence | Lch-Mir-456_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCAGGCAUCUUCCCAGCCUACA -22
Get sequence
|
| Mature sequence | Lch-Mir-456_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- CAGGCUGGUUAGAUGGUUGUC -61
Get sequence
|
