| MirGeneDB ID | Lch-Mir-458 |
|---|---|
| Family name | MIR-458 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-458 Ami-Mir-458 Cli-Mir-458 Cli-Mir-458-as Cpi-Mir-458 Dre-Mir-458 Gga-Mir-458 Gga-Mir-458-as Gja-Mir-458 Gmo-Mir-458 Loc-Mir-458 Mal-Mir-458 Mun-Mir-458 Oan-Mir-458 Pbv-Mir-458 Spt-Mir-458 Tgu-Mir-458 Tni-Mir-458 Xla-Mir-458-P1 Xla-Mir-458-P2 Xtr-Mir-458 |
| Node of Origin (locus) | Osteichthyes |
| Node of Origin (family) | Osteichthyes |
| Genome context (LatCha1_add) |
JH126722.1: 216349-216406 [+] Ensembl |
| Seed | UAGCUCU |
| Precursor (pre-Mir +30nt flank) |
CUGCAUGUUUGCAUCCGAGGUGCAGAUGGCAGUGCCAUUUGCAAAGCUAUAAACAGUAUCAUUGUCAUAGCUCUUUGAAUGGUACUGCCAUAUGUACUAAACAAUCAGCACACUCAAUGet precursor sequence |
| Structure | 10 20 30 40 50 CUGCAUGUUUGCAUCCGA--| G CAA AAACAGU GGUGCA AUGGCAGUGCCAUUUG AGCUAU A UCAUGU UACCGUCAUGGUAAGU UCGAUA U UAACUCACACGACUAACAAA^ A UUC CUGUUAC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-458_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGUGCCAUUUGCAAAGCUAUAA -22
Get sequence
|
| Mature sequence | Lch-Mir-458_3p (predicted) |
| mirBase accession | None |
| Sequence |
36- AUAGCUCUUUGAAUGGUACUGC -58
Get sequence
|
