MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-2-P2j

Family name MIR-2 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Lpo-Mir-2-P2g  Lpo-Mir-2-P2h  Lpo-Mir-2-P2l  Lpo-Mir-2-P2m  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3l  Lpo-Mir-2-P3m  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l 
Orthologues Dma-Mir-2-o2  Dma-Mir-2-P2  Dpu-Mir-2-o2  Dpu-Mir-2-P2  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666453.1: 404784-404843 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P2j)		 Mir-71-P10 NW_013666453.1: 400160-400219 [+] Ensembl
Mir-2-P1j NW_013666453.1: 400599-400660 [+] Ensembl
Mir-2-P2j NW_013666453.1: 404784-404843 [+] Ensembl
Mir-2-P4j NW_013666453.1: 412982-413043 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
AGGACCAGAAGAAGCACAUGCCUCGCUUGGCCGCCACUAUGGCAGUGAUAUGUUAUGCACAAAAUCAUAUCACAGUCAUCUUGACGUGUCUUGAGAGGAUAAUUUUACUUCUUUGCUCAU
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Structure
        10        20          30         40        50         
AGGACCAGAAGAAGCACAUG--    GCUU   -| C  CU     A        UUAUGC 
                      CCUC    GGC CG CA  AUGGC GUGAUAUG      \
                      GGAG    CUG GC GU  UACUG CACUAUAC      A
UACUCGUUUCUUCAUUUUAAUA    AGUU   U^ A  UC     A        UAAAAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Star sequence

Lpo-Mir-2-P2j_5p*
mirBase accessionNone
Sequence 
0- CCGCCACUAUGGCAGUGAUAUG -22
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Mature sequence

Lpo-Mir-2-P2j_3p
mirBase accessionNone
Sequence 
37- UAUCACAGUCAUCUUGACGUGUC -60
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