MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-2-P3m

Family name MIR-2 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Lpo-Mir-2-P2g  Lpo-Mir-2-P2h  Lpo-Mir-2-P2j  Lpo-Mir-2-P2l  Lpo-Mir-2-P2m  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3l  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l 
Orthologues Aae-Mir-2-P3  Aga-Mir-2-P3  Bge-Mir-2-P3-v1  Cbr-Mir-2-o3  Cel-Mir-2-o3  Dlo-Mir-2-P3-v1  Dma-Mir-2-P3  Dpu-Mir-2-P3  Gsp-Mir-2  Hme-Mir-2-P3-v1  Isc-Mir-2-P3  Ple-Mir-2  Tca-Mir-2-P3-v1 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013668542.1: 87725-87786 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P3m)		 Mir-71-P13 NW_013668542.1: 80832-80891 [+] Ensembl
Mir-2-P1m NW_013668542.1: 81176-81238 [+] Ensembl
Mir-2-P2m NW_013668542.1: 83483-83542 [+] Ensembl
Mir-2-P3m NW_013668542.1: 87725-87786 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
GCCUGAAAGCAGUGAAUCAGGUUUUCAUCACUCACAAAGUGGUUGUUGUAUGCUUCUGCUACUGUUCAUAUCACAGCCAGCUUUGAUGAGUGAAGAAGCUACUGUUGACUUCAGAGUAGUGA
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Structure
        10         20         30          40        50         
GCCUGAAAGCAGUGAAU-   GU-    A       -     -|      U     CUUCUG 
                  CAG   UUUC UCACUCA CAAAG UGGUUGU GUAUG      C
                  GUC   GAAG AGUGAGU GUUUC ACCGACA UAUAC      U
AGUGAUGAGACUUCAGUU   AUC    A       A     G^      C     UUGUCA 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Star sequence

Lpo-Mir-2-P3m_5p*
mirBase accessionNone
Sequence 
0- CUCACAAAGUGGUUGUUGUAUG -22
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Mature sequence

Lpo-Mir-2-P3m_3p
mirBase accessionNone
Sequence 
38- UAUCACAGCCAGCUUUGAUGAGUG -62
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