MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-2-P3

Family name MIR-2 (all species)
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-2-o2  Dma-Mir-2-P1  Dma-Mir-2-P2  Dma-Mir-2-P4  Dma-Mir-2-P5 
Orthologues Aae-Mir-2-P3  Aga-Mir-2-P3  Bge-Mir-2-P3-v1  Cbr-Mir-2-o3  Cel-Mir-2-o3  Csc-Mir-2-P3n  Csc-Mir-2-P3o  Dan-Mir-2-P3a-v1  Dan-Mir-2-P3b  Dlo-Mir-2-P3-v1  Dme-Mir-2-P3a  Dme-Mir-2-P3b  Dmo-Mir-2-P3b  Dpu-Mir-2-P3  Dsi-Mir-2-P3a  Dsi-Mir-2-P3b  Dya-Mir-2-P3a  Dya-Mir-2-P3b  Gpa-Mir-2-P3a  Gpa-Mir-2-P3b  Gsp-Mir-2  Hme-Mir-2-P3-v1  Isc-Mir-2-P3  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3l  Lpo-Mir-2-P3m  Ple-Mir-2  Tca-Mir-2-P3-v1 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)		 NC_046175.1: 11973888-11973956 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P3)		 Mir-71 NC_046175.1: 11973451-11973516 [+] Ensembl
Mir-2-P1 NC_046175.1: 11973585-11973670 [+] Ensembl
Mir-2-P2 NC_046175.1: 11973770-11973832 [+] Ensembl
Mir-2-P3 NC_046175.1: 11973888-11973956 [+] Ensembl
Mir-2-P4 NC_046175.1: 11974083-11974146 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
CCUUGAAAGACAAAUGCUAACAUUGUACCGCUCGCAAAGUGGCUGUCAUGUGUCCCCCAAUAAUCAUGCGUUUCAUAUCACAGCCAGCUUUGAUGAGCGGGACAUUUAGCCCAAAAAUAAAAGUCCAAC
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Structure
        10        20          30          40        50        60   
CCUUGAAAGACAAAUGCUAACAU--   A       -     -|      C     UCCCCCAAUA 
                         UGU CCGCUCG CAAAG UGGCUGU AUGUG          \
                         ACA GGCGAGU GUUUC ACCGACA UAUAC          A
CAACCUGAAAAUAAAAACCCGAUUU   G       A     G^      C     UUUGCGUACU 
       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-2-P3_5p*
mirBase accessionNone
Sequence 
0- CUCGCAAAGUGGCUGUCAUGUG -22
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Mature sequence

Dma-Mir-2-P3_3p
mirBase accessionNone
Sequence 
45- UAUCACAGCCAGCUUUGAUGAGCG -69
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