MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-142-P4

Family name MIR-142 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-142-P2-v1  Mal-Mir-142-P4-v1 
Orthologues Aca-Mir-142-P4-v1  Ami-Mir-142-P4-v1  Cpi-Mir-142-P4-v1  Dre-Mir-142-P4-v1  Gja-Mir-142-P4-v1  Gmo-Mir-142-P4-v1  Lch-Mir-142-P4  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Tni-Mir-142-P4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884934.1: 669473-669532 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P4-v3)		 Mir-142-P4-v4 KV884934.1: 669471-669534 [+] UCSC Ensembl
Mir-142-P4-v1 KV884934.1: 669473-669532 [+] UCSC Ensembl
Mir-142-P4-v2 KV884934.1: 669473-669532 [+] UCSC Ensembl
Mir-142-P4-v3 KV884934.1: 669473-669532 [+] UCSC Ensembl
Variant

Mal-Mir-142-P4-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
AAGAAGCUGCUGAUGUACAGUGUUGUCACCCAUAAAGUAGAAAGCACUACUAAACUUUACUGCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUAUACUGUUGGCUGCGAAGGACUGUA
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Structure
        10          20        30        40        50         
AAGAAGCUGCUGAUGUA--|     UG   C           A         UAAACUUU 
                   CAGUGU  UCA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUA  AGU GGUAUUUCAUC UUUGUGAUG        C
AUGUCAGGAAGCGUCGGUU^     UG   A           C         UGACACGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-142-P4-v3_5p*
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Mal-Mir-142-P4-v3_3p
mirBase accessionNone
Sequence 
37- UGUAGUGUUUCCUACUUUAUGGA -60
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Variant

Mal-Mir-142-P4-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
AAGAAGCUGCUGAUGUACAGUGUUGUCACCCAUAAAGUAGAAAGCACUACUAAACUUUACUGCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUAUACUGUUGGCUGCGAAGGACUGUA
Get precursor sequence
Structure
        10          20        30        40        50         
AAGAAGCUGCUGAUGUA--|     UG   C           A         UAAACUUU 
                   CAGUGU  UCA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUA  AGU GGUAUUUCAUC UUUGUGAUG        C
AUGUCAGGAAGCGUCGGUU^     UG   A           C         UGACACGU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-142-P4-v1_5p
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Mal-Mir-142-P4-v1_3p*
mirBase accessionNone
Sequence 
39- UAGUGUUUCCUACUUUAUGGA -60
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Variant

Mal-Mir-142-P4-v2
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
AAGAAGCUGCUGAUGUACAGUGUUGUCACCCAUAAAGUAGAAAGCACUACUAAACUUUACUGCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUAUACUGUUGGCUGCGAAGGACUGUA
Get precursor sequence
Structure
        10          20        30        40        50         
AAGAAGCUGCUGAUGUA--|     UG   C           A         UAAACUUU 
                   CAGUGU  UCA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUA  AGU GGUAUUUCAUC UUUGUGAUG        C
AUGUCAGGAAGCGUCGGUU^     UG   A           C         UGACACGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-142-P4-v2_5p
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACUA -22
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Co-mature sequence

Mal-Mir-142-P4-v2_3p
mirBase accessionNone
Sequence 
38- GUAGUGUUUCCUACUUUAUGGA -60
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Variant

Mal-Mir-142-P4-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
ACAAGAAGCUGCUGAUGUACAGUGUUGUCACCCAUAAAGUAGAAAGCACUACUAAACUUUACUGCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUAUACUGUUGGCUGCGAAGGACUGUAAC
Get precursor sequence
Structure
        10          20        30        40        50        60 
ACAAGAAGCUGCUGAUGU--|      UG   C           A         UAAACUUU 
                    ACAGUGU  UCA CCAUAAAGUAG AAGCACUAC        A
                    UGUCAUA  AGU GGUAUUUCAUC UUUGUGAUG        C
CAAUGUCAGGAAGCGUCGGU^      UG   A           C         UGACACGU 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-142-P4-v4_5p
mirBase accessionNone
Sequence 
0- CCCAUAAAGUAGAAAGCACUAC -22
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Co-mature sequence

Mal-Mir-142-P4-v4_3p
mirBase accessionNone
Sequence 
42- AGUGUUUCCUACUUUAUGGAUG -64
Get sequence