MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-1541

Family name MIR-1541 (all species)
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-1541
Paralogues
Orthologues Neu-Mir-1541  Sha-Mir-1541 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)		 4: 400891450-400891510 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1541)		 Mir-430-P52 4: 400890413-400890471 [-] UCSC Ensembl
Mir-430-P51 4: 400890701-400890759 [-] UCSC Ensembl
Mir-7303-P2 4: 400890972-400891034 [-] UCSC Ensembl
Mir-1541 4: 400891450-400891510 [-] UCSC Ensembl
Mir-7304 4: 400891594-400891652 [-] UCSC Ensembl
Mir-7303-P1-v1 4: 400892027-400892085 [-] UCSC Ensembl
Mir-7303-P1-v2 4: 400892027-400892085 [-] UCSC Ensembl
Seed GGUGUGC
Precursor
(pre-Mir +30nt flank)		 
CAGGACUUCACCGCUGACCUUCAGCCUGUGACAUCCCAACUGGGCACACUGUUGUGAUCAUGGAGCAGAUGGUGUGCUCGUUUGGAUGUGGCAGUUUGCGAGGGAUGGGCAUCCCAUGAUC
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Structure
        10         20         30        40        50        60
CAGGACUUCACCGCUGA-    -|  C    G      C   U            GUGAUC 
                  CCUU CAG CUGU ACAUCC AAC GGGCACACUGUU      A
                  GGAG GUU GACG UGUAGG UUG CUCGUGUGGUAG      U
CUAGUACCCUACGGGUAG    C^  U    G      U   -            ACGAGG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Br Ce He Ki Te
Star sequence

Mdo-Mir-1541_5p*
mirBase accessionMIMAT0006140
Sequence 
0- ACAUCCCAACUGGGCACACUGUU -23
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Proposed targets TargetScanVert: mdo-miR-1541
Mature sequence

Mdo-Mir-1541_3p
mirBase accessionNone
Sequence 
39- UGGUGUGCUCGUUUGGAUGUGG -61
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