Mir-92-P2c

MirGeneDB ID

Mdo-Mir-92-P2c

Family name

MIR-92 (all species)

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-363

Paralogues

Mdo-Mir-92-P1a Mdo-Mir-92-P1c Mdo-Mir-92-P1d Mdo-Mir-92-P2a Mdo-Mir-92-P2d

Orthologues

Aca-Mir-92-P2c Ami-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2c Cel-Mir-92 Cfa-Mir-92-P2c Cja-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Cpo-Mir-92-P2c Dno-Mir-92-P2c Dre-Mir-92-P2c Eca-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2c Isc-Mir-92 Laf-Mir-92-P2c Lch-Mir-92-P2c Loc-Mir-92-P2c Mml-Mir-92-P2c Mmr-Mir-92-P2c Mmu-Mir-92-P2c Mun-Mir-92-P2c Neu-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pab-Mir-92-P2c Pbv-Mir-92-P2c Rno-Mir-92-P2c Sha-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Sto-Mir-92-P2c Tgu-Mir-92-P2c Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xtr-Mir-92-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(monDom5_add)

X: 35202093-35202159 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2c)

Mir-92-P2c X: 35202093-35202159 [-] UCSC Ensembl
Mir-92-P1c X: 35202231-35202295 [-] UCSC Ensembl
Mir-19-P2c X: 35202389-35202447 [-] UCSC Ensembl
Mir-17-P4c X: 35202543-35202603 [-] UCSC Ensembl
Mir-17-P2c X: 35202855-35202919 [-] UCSC Ensembl
Mir-17-P1c X: 35203052-35203108 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GAGGGGCCGUUCUAGCUGUUUUUGCUGUGUCGGGUGGAUCACGAUGCAAAUUUUGAUAAGUUUAAUAGGAGAAAAAAUUGCACGGUAUCCAUCUGUAAACCGCAAGACCUUAUGCAGUGGCAGCUUG

Get precursor sequence

Structure

        10         20        30         40        50        60   
GAGGGGCCGUUCUAGCUGU-      U  GU-|        CA  A     A   UGAUAAGUU 
                    UUUUGC GU   CGGGUGGAU  CG UGCAA UUU         U
                    AGAACG CA   GUCUACCUA  GC ACGUU AAA         A
GUUCGACGGUGACGUAUUCC      C  AAU^        UG  -     A   AAGAGGAUA 
     120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Mdo-Mir-92-P2c_5p* (predicted)

mirBase accession

MIMAT0012755

Sequence

0- CGGGUGGAUCACGAUGCAAAUUU -23

Get sequence

Proposed targets

TargetScanVert: mdo-miR-363

Mature sequence

Mdo-Mir-92-P2c_3p

mirBase accession

None

Sequence

45- AAUUGCACGGUAUCCAUCUGUA -67

Get sequence