Mir-2001

MirGeneDB ID

Mgi-Mir-2001

Family name

MIR-2001 (all species)

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Orthologues

Agr-Mir-2001 Bge-Mir-2001-P1 Bge-Mir-2001-P2 Cbr-Mir-2001 Cel-Mir-2001 Csc-Mir-2001 Cte-Mir-2001-v1 Dan-Mir-2001 Dgr-Mir-2001 Dlo-Mir-2001-v1 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Eba-Mir-2001 Gpa-Mir-2001 Gsa-Mir-2001 Hme-Mir-2001 Hmi-Mir-2001 Hru-Mir-2001 Isc-Mir-2001 Lan-Mir-2001-P3 Lan-Mir-2001-P4 Lgi-Mir-2001 Lhy-Mir-2001 Llo-Mir-2001 Lpo-Mir-2001 Mom-Mir-2001 Npo-Mir-2001 Ofu-Mir-2001 Pau-Mir-2001 Pcr-Mir-2001 Pdu-Mir-2001 Pfl-Mir-2001 Pmi-Mir-2001 Pve-Mir-2001 Rph-Mir-2001 Sko-Mir-2001 Snu-Mir-2001 Spu-Mir-2001 Sro-Mir-2001 Tur-Mir-2001 War-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold1366: 96730-96789 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2001)

Mir-2001 scaffold1366: 96730-96789 [+] Ensembl
Mir-252-P1 scaffold1366: 96960-97021 [+] Ensembl
Mir-252-P2 scaffold1366: 106402-106459 [+] Ensembl

Seed

UUGUGAC

Precursor
(pre-Mir +30nt flank)

CCUUUUUGUGACAUCGAUAAUCCUUCCUUUUUUGUGACCGUUAUAAUGGGCAUAACGUCUUAUGAAUGCUCGUUGUAUCGAUCAUCAAAAUGGAGGAAUAUGCACGACAGAGCACAAGGU

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Structure

        10        20           30        40        50         
CCUUUUUGUGACAUCGAUAA---|   U  U    U    C  U           UAACGU 
                       UCCU CC UUUU GUGA CG UAUAAUGGGCA      C
                       AGGA GG AAAA UACU GC AUGUUGCUCGU      U
UGGAACACGAGACAGCACGUAUA^   -  U    C    A  U           AAGUAU 
.       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Mature sequence

Mgi-Mir-2001_5p

mirBase accession

None

Sequence

0- UUUGUGACCGUUAUAAUGGGCA -22

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Star sequence

Mgi-Mir-2001_3p*

mirBase accession

None

Sequence

38- CUCGUUGUAUCGAUCAUCAAAA -60

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