MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-92-o33

Family name MIR-92 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-92-o32  Mgi-Mir-92-o34  Mgi-Mir-92-o35 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. gigas
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold459: 320194-320253 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o33)		 Mir-92-o35 scaffold459: 310883-310941 [-] Ensembl
Mir-92-o34 scaffold459: 311201-311262 [-] Ensembl
Mir-92-o33 scaffold459: 320194-320253 [-] Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
GGAGGGCUUCUAUUAUCAGGGGUCUUGUAUGGGCUGGAGCGGCUGCAAAGCAGUGAUGGUGGUUUCUGUAUUGCACUCGUCCCGGCCGAUAUCUGGACCUCCCUUCCUUCAUCCUCCCUC
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Structure
        10         20         30        40        50         
GGAGGGCUUCUAUUAUCA-       U-|   G      AG  GC     A   GUGAUG 
                   GGGGUCU  GUAU GGCUGG  CG  UGCAA GCA      G
                   CUCCAGG  UAUA CCGGCC  GC  ACGUU UGU      U
CUCCCUCCUACUUCCUUCC       UC^   G      CU  UC     A   CUUUGG 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-92-o33_5p*
mirBase accessionNone
Sequence 
0- GGGCUGGAGCGGCUGCAAAGCA -22
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Mature sequence

Mgi-Mir-92-o33_3p
mirBase accessionNone
Sequence 
38- UAUUGCACUCGUCCCGGCCGAU -60
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