MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-92-o35

Family name MIR-92 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-92-o32  Mgi-Mir-92-o33  Mgi-Mir-92-o34 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. gigas
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold459: 310883-310941 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o35)		 Mir-92-o35 scaffold459: 310883-310941 [-] Ensembl
Mir-92-o34 scaffold459: 311201-311262 [-] Ensembl
Mir-92-o33 scaffold459: 320194-320253 [-] Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
GGUGCGGGGGAGUAGAUUGUGAUUACGUUACGGCGGGGACCAGGGCAAUAUGGUGUAACACAAAUCCAAUUGCACAAGUCCCGGCCUGCCCGUGAAUUGCACGUCUUCAGGGGAUUUCG
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Structure
        10         20         30        40        50         
GGUGCGGGGGAGUAGAU-  UG -|    UUAC   G     CAGG     A   UGUAA 
                  UG  A UUACG    GGC GGGAC    GCAAU UGG     C
                  AC  U AGUGC    CCG CCCUG    CGUUA ACC     A
GCUUUAGGGGACUUCUGC  GU A^    CCGU   G     AACA     -   UAAAC 
       110       100        90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-92-o35_5p*
mirBase accessionNone
Sequence 
0- CGGCGGGGACCAGGGCAAUAUGG -23
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Mature sequence

Mgi-Mir-92-o35_3p
mirBase accessionNone
Sequence 
37- AAUUGCACAAGUCCCGGCCUGC -59
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